5E9B
Crystal structure of human heparanase in complex with HepMer M09S05a
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Heparanase | polymer | 389 | 43733.3 | 1 | UniProt (Q9Y251) Pfam (PF03662) In PDB | Homo sapiens (Human) | Endo-glucoronidase,Heparanase-1,Hpa1 |
| 2 | B | Heparanase | polymer | 77 | 8542.8 | 1 | UniProt (Q9Y251) In PDB | Homo sapiens (Human) | Endo-glucoronidase,Heparanase-1,Hpa1 |
| 3 | C | 2-deoxy-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid | branched | 932.8 | 1 | In PDB GlyTouCan (G91368RE) | |||
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 5 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 6 | water | water | 18.0 | 201 | Chemie (HOH) |
Sequence modifications
A: 158 - 543 (UniProt: Q9Y251)
B: 36 - 109 (UniProt: Q9Y251)
| PDB | External Database | Details |
|---|---|---|
| Asp 155 | - | expression tag |
| Pro 156 | - | expression tag |
| Gly 157 | - | expression tag |
| Arg 307 | Lys 307 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 33 | - | expression tag |
| Pro 34 | - | expression tag |
| Gly 35 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 52276.1 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 932.8 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 699.1 | |
| All* | Total formula weight | 53907.9 |
