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5DYT

Crystal structure of human butyrylcholinesterase in complex with N-((1-benzylpiperidin-3-yl)methyl)-N-methylnaphthalene-2-sulfonamide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Cholinesterasepolymer53059774.52UniProt (P06276)
Pfam (PF00135)
Homo sapiens (Human)Acylcholine acylhydrolase,Butyrylcholine esterase,Choline esterase II,Pseudocholinesterase
2C, E, G
(C, E, G)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched570.53In PDB
GlyTouCan (G21290RB)
3D, F, H
(D, F, H)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
4I
(I)
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched367.31In PDB
GlyTouCan (G86851RC)
5J, K, T, U, V...
(A, B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.28Chemie (NAG)
6AA, L
(B, A)
N-{[(3R)-1-benzylpiperidin-3-yl]methyl}-N-methylnaphthalene-2-sulfonamidenon-polymer408.62Chemie (5HB)
7BA, CA, M, N, O
(B, A)
GLYCEROLnon-polymer92.15Chemie (GOL)
8DA, EA, FA, P
(B, A)
1,2-ETHANEDIOLnon-polymer62.14Chemie (EDO)
9GA, HA, IA, Q, R...
(B, A)
UNKNOWN LIGANDnon-polymer6Chemie (UNX)
10W
(B)
beta-L-fucopyranosenon-polymer164.21Chemie (FUL)
11JA
(B)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
12KA, LA
(A, B)
waterwater18.0232Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight119549.0
BranchedNumber of molecules7
Total formula weight3352.2
Non-Polymers*Number of molecules27
Total formula weight3565.8
All*Total formula weight126467.0
*Water molecules are not included.

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PDB entries from 2025-12-17

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