5DYN
B. fragilis cysteine protease
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Putative peptidase | polymer | 130 | 14413.3 | 1 | UniProt (Q5LBR6) Pfam (PF03415) | Bacteroides fragilis | |
| 2 | B (B) | Putative peptidase | polymer | 252 | 28722.9 | 1 | UniProt (Q5LBR6) Pfam (PF03415) | Bacteroides fragilis | |
| 3 | C, D, E, F, G... (A, B) | SODIUM ION | non-polymer | 23.0 | 8 | Chemie (NA) | |||
| 4 | K (B) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 5 | L, M (A, B) | water | water | 18.0 | 50 | Chemie (HOH) |
Sequence modifications
A: 20 - 147 (UniProt: Q5LBR6)
B: 148 - 393 (UniProt: Q5LBR6)
| PDB | External Database | Details |
|---|---|---|
| Met 18 | - | initiating methionine |
| Ala 19 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asp 242 | Asn 229 | conflict |
| Thr 372 | Ala 359 | conflict |
| His 394 | - | expression tag |
| His 395 | - | expression tag |
| His 396 | - | expression tag |
| His 397 | - | expression tag |
| His 398 | - | expression tag |
| His 399 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 43136.2 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 219.4 | |
| All* | Total formula weight | 43355.5 |
