5DDG
The structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI in complex with target double strand DNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | transcriptional factor AraR | polymer | 228 | 26622.1 | 2 | UniProt (Q8AAV8) Pfam (PF00293) Pfam (PF21906) In PDB | Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) | NUDIX family hydrolase |
| 2 | C | DNA (27-MER) | polymer | 27 | 8235.3 | 1 | Bacteroides thetaiotaomicron VPI-5482 | ||
| 3 | D | DNA (27-MER) | polymer | 27 | 8355.4 | 1 | Bacteroides thetaiotaomicron VPI-5482 | ||
| 4 | A, B | MALONIC ACID | non-polymer | 104.1 | 2 | Chemie (MLA) | |||
| 5 | A, B | FORMIC ACID | non-polymer | 46.0 | 2 | Chemie (FMT) | |||
| 6 | water | water | 18.0 | 16 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 225 (UniProt: Q8AAV8)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 69835.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 300.2 | |
| All* | Total formula weight | 70135.2 |
