5D8H
CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 23S ribosomal RNA | polymer | 74 | 23928.3 | 1 | REF (470491724) | Methanocaldococcus jannaschii | |
| 2 | B | 50S ribosomal protein L10 | polymer | 213 | 23635.2 | 1 | UniProt (P54049) Pfam (PF00466) Pfam (PF17777) In PDB | Methanocaldococcus jannaschii | Acidic ribosomal protein P0 homolog,MjaL10 |
| 3 | C | 50S ribosomal protein L11 | polymer | 161 | 17794.7 | 1 | UniProt (P54030) Pfam (PF03946) Pfam (PF00298) In PDB | Methanocaldococcus jannaschii | |
| 4 | D | THIOSTREPTON | polymer | 19 | 1806.0 | 1 | UniProt (P0C8P8) In PDB BIRD (PRD_000223) | Streptomyces azureus | |
| 5 | A, C | MAGNESIUM ION | non-polymer | 24.3 | 11 | Chemie (MG) | |||
| 6 | A, B | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 7 | A, B | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 3 | Chemie (TRS) | |||
| 8 | water | water | 18.0 | 65 | Chemie (HOH) |
Sequence modifications
A: 1151 - 1223 (REF: 470491724)
B: 9 - 221 (UniProt: P54049)
| PDB | External Database | Details |
|---|---|---|
| C 1224 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Mse 9 | Val 9 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 67164.1 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 725.7 | |
| All* | Total formula weight | 67889.9 |
