5CX8
Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Lipoprotein RagB | polymer | 481 | 54609.1 | 2 | UniProt (F5H948) Pfam (PF14322) Pfam (PF07980) In PDB | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) | |
| 2 | A | 3-deoxy-beta-D-glucopyranose | non-polymer | 164.2 | 1 | Chemie (3DO) | |||
| 3 | A | 6-O-phosphono-D-tagatose | non-polymer | 260.1 | 1 | Chemie (TG6) | |||
| 4 | A, B | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 5 | A | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 6 | B | 3-deoxy-5-O-phosphono-beta-D-ribofuranose | non-polymer | 214.1 | 1 | Chemie (RP3) | |||
| 7 | water | water | 18.0 | 509 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 109218.2 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1032.8 | |
| All* | Total formula weight | 110251.0 |
