5CVA
Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, D) | Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain | polymer | 71 | 7138.7 | 2 | UniProt (P08123) UniProt (P20849) | Homo sapiens (Human) | Alpha-2 type I collagen |
| 2 | B, E (B, E) | Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain | polymer | 71 | 6871.8 | 2 | UniProt (P02452) UniProt (Q14055) Pfam (PF01391) | Homo sapiens (Human) | Alpha-1 type I collagen |
| 3 | C, F (C, F) | Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain | polymer | 72 | 6999.0 | 2 | UniProt (P02452) UniProt (Q14050) Pfam (PF01391) | Homo sapiens (Human) | Alpha-1 type I collagen |
| 4 | G, H (A, F) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 5 | I, J, K, L, M... (A, B, C, D, E...) | water | water | 18.0 | 76 | Chemie (HOH) |
Sequence modifications
A, D: 15 - 26 (UniProt: P08123)
A, D: 36 - 71 (UniProt: P20849)
B, E: 15 - 26 (UniProt: P02452)
B, E: 36 - 71 (UniProt: Q14055)
C, F: 15 - 26 (UniProt: P02452)
C, F: 36 - 72 (UniProt: Q14050)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | - | expression tag |
| Ser 2 | - | expression tag |
| Gly 3 | - | expression tag |
| Pro 4 | - | expression tag |
| Pro 5 | - | expression tag |
| Gly 6 | - | expression tag |
| Pro 7 | - | expression tag |
| Pro 8 | - | expression tag |
| Gly 9 | - | expression tag |
| Pro 10 | - | expression tag |
| Pro 11 | - | expression tag |
| Gly 12 | - | expression tag |
| Pro 13 | - | expression tag |
| Pro 14 | - | expression tag |
| Gly 27 | - | linker |
| Pro 28 | - | linker |
| Pro 29 | - | linker |
| Gly 30 | - | linker |
| Pro 31 | - | linker |
| Pro 32 | - | linker |
| Gly 33 | - | linker |
| Pro 34 | - | linker |
| Pro 35 | - | linker |
B, E: 15 - 26 (UniProt: P02452)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | - | expression tag |
| Ser 2 | - | expression tag |
| Gly 3 | - | expression tag |
| Pro 4 | - | expression tag |
| Pro 5 | - | expression tag |
| Gly 6 | - | expression tag |
| Pro 7 | - | expression tag |
| Pro 8 | - | expression tag |
| Gly 9 | - | expression tag |
| Pro 10 | - | expression tag |
| Pro 11 | - | expression tag |
| Gly 12 | - | expression tag |
| Pro 13 | - | expression tag |
| Pro 14 | - | expression tag |
| Gly 27 | - | linker |
| Pro 28 | - | linker |
| Pro 29 | - | linker |
| Gly 30 | - | linker |
| Pro 31 | - | linker |
| Pro 32 | - | linker |
| Gly 33 | - | linker |
| Pro 34 | - | linker |
| Pro 35 | - | linker |
C, F: 15 - 26 (UniProt: P02452)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | - | expression tag |
| Ser 2 | - | expression tag |
| Gly 3 | - | expression tag |
| Pro 4 | - | expression tag |
| Pro 5 | - | expression tag |
| Gly 6 | - | expression tag |
| Pro 7 | - | expression tag |
| Pro 8 | - | expression tag |
| Gly 9 | - | expression tag |
| Pro 10 | - | expression tag |
| Pro 11 | - | expression tag |
| Gly 12 | - | expression tag |
| Pro 13 | - | expression tag |
| Pro 14 | - | expression tag |
| Gly 27 | - | linker |
| Pro 28 | - | linker |
| Pro 29 | - | linker |
| Gly 30 | - | linker |
| Pro 31 | - | linker |
| Pro 32 | - | linker |
| Gly 33 | - | linker |
| Pro 34 | - | linker |
| Pro 35 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 42019.0 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 184.2 | |
| All* | Total formula weight | 42203.1 |
