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5CCN

Human Cyclophilin D Complexed with Inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Peptidyl-prolyl cis-trans isomerase F, mitochondrialpolymer16417652.11UniProt (P30405)
Pfam (PF00160)
Homo sapiens (Human)PPIase F,Cyclophilin D,CypD,Cyclophilin F,Mitochondrial cyclophilin,CyP-M,Rotamase F
2B
(A)
POTASSIUM IONnon-polymer39.11Chemie (K)
3C
(A)
FORMIC ACIDnon-polymer46.01Chemie (FMT)
4D
(A)
TETRAETHYLENE GLYCOLnon-polymer194.21Chemie (PG4)
5E
(A)
TRIETHYLENE GLYCOLnon-polymer150.21Chemie (PGE)
6F
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
7G
(A)
ethyl N-{[3-(3-aminopyridin-4-yl)benzyl]carbamoyl}glycinatenon-polymer328.41Chemie (4ZZ)
8H
(A)
waterwater18.0123Chemie (HOH)
Sequence modifications
A: 2 - 165 (UniProt: P30405)
PDBExternal DatabaseDetails
Ile 133Lys 175engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight17652.1
Non-Polymers*Number of molecules6
Total formula weight864.0
All*Total formula weight18516.1
*Water molecules are not included.

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PDB entries from 2025-06-18

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