5C1P
Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | D-alanine--D-alanine ligase | polymer | 306 | 33179.8 | 4 | UniProt (Q8ZIE7) Pfam (PF01820) Pfam (PF07478) | Yersinia pestis | D-Ala-D-Ala ligase,D-alanylalanine synthetase |
| 2 | E, I, L, R, V (A, B, C, D) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 3 | F, G, J, N, O... (A, B, C) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 4 | H, K, S (B, C, D) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 3 | Chemie (ADP) | |||
| 5 | M (C) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 6 | T, U (D) | D-ALANINE | non-polymer | 89.1 | 2 | Chemie (DAL) | |||
| 7 | W, X, Y, Z (A, B, C, D) | water | water | 18.0 | 218 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 132719.2 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 2278.4 | |
| All* | Total formula weight | 134997.6 |
