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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5BR8

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		16S ribosomal RNApolymer1522494169.81GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2B
(B)		30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3C
(C)		30S ribosomal protein S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4D
(D)		30S ribosomal protein S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5E
(E)		30S ribosomal protein S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6F
(F)		30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7G
(G)		30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8H
(H)		30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9I
(I)		30S ribosomal protein S9polymer12814410.61UniProt (P80374)
Pfam (PF00380)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10J
(J)		30S ribosomal protein S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11K
(K)		30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12L
(L)		30S ribosomal protein S12polymer13514966.81UniProt (Q5SHN3)
Pfam (PF00164)		Thermus thermophilus
13M
(M)		30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14N
(N)		30S ribosomal protein S14 type Zpolymer617158.71UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15O
(O)		30S ribosomal protein S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16P
(P)		30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17Q
(Q)		30S ribosomal protein S17polymer10512324.71UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18R
(R)		30S ribosomal protein S18polymer8810258.31UniProt (Q5SLQ0)
Pfam (PF01084)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19S
(S)		30S ribosomal protein S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20T
(T)		30S ribosomal protein S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21U
(U)		30S ribosomal protein Thxpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
22AA, V, W, X, Y...
(A)		PAROMOMYCINnon-polymer615.66Chemie (PAR)
PubChem (165580)
PubChem (6602492)
PubChem (6713982)
PubChem (9961808)
PubChem (16757804)
PubChem (16760604)
PubChem (17757254)
PubChem (20849281)
PubChem (71191297)
PubChem (23789070)
PubChem (24096964)
PubChem (24867526)
PubChem (24867858)
PubChem (25104843)
PubChem (44120093)
PubChem (44251565)
PubChem (71188564)
PubChem (44186758)
PubChem (44663324)
PubChem (45358711)
PubChem (50989619)
PubChem (66932615)
PubChem (68032118)
PubChem (4689)
PubChem (14951)
PubChem (24176)
PubChem (70878598)
PubChem (71751432)
PubChem (73707499)
PubChem (3040200)
PubChem (91867972)
PubChem (91972181)
PubChem (94469268)
PubChem (98048759)
PubChem (98048761)
PubChem (53486370)
PubChem (5702262)
PubChem (121292209)
PubChem (6603975)
PubChem (6604293)
PubChem (122537356)
PubChem (6710686)
PubChem (124226135)
PubChem (124464537)
PubChem (9809147)
PubChem (125040357)
PubChem (125040359)
PubChem (125121197)
PubChem (129009945)
PubChem (131841783)
PubChem (132275078)
PubChem (12313981)
PubChem (58160567)
PubChem (152952600)
PubChem (162873319)
PubChem (59361026)
PubChem (59800245)
PubChem (70793652)
PubChem (70793824)
PubChem (70795918)
PubChem (71068776)
PubChem (71072581)
PubChem (71072592)
PubChem (91151908)
PubChem (94469269)
PubChem (94469270)
PubChem (94469271)
PubChem (98048758)
PubChem (98048760)
PubChem (101739930)
PubChem (118213779)
PubChem (118705495)
PubChem (122691713)
PubChem (124226132)
PubChem (124226133)
PubChem (124226134)
PubChem (124464538)
PubChem (124761786)
PubChem (124761787)
PubChem (124761788)
PubChem (124761789)
PubChem (125040358)
PubChem (125040360)
PubChem (125121198)
PubChem (129014632)
PubChem (129014634)
PubChem (129014635)
PubChem (129313238)
PubChem (134771120)
PubChem (137404838)
PubChem (161153506)
PubChem (163199098)
PubChem (164850471)
PubChem (172091638)
PubChem (173719997)
23AB, AC, AD, AE, AF...
(A, S, T, B, D...)		MAGNESIUM IONnon-polymer24.3287Chemie (MG)
PubChem (888)
24PK, XK
(D, N)		ZINC IONnon-polymer65.42Chemie (ZN)
25EL, FL, GL, HL, IL...
(A, D, E, H, K...)		waterwater18.0308Chemie (HOH)
Sequence modifications
A: 0 - 1533 (GenBank: 55771382)
PDBExternal DatabaseDetails
C 1534-expression tag
A 1535-expression tag
C 1536-expression tag
U 1537-expression tag
C 1538-expression tag
C 1539-expression tag
Psu 1540-expression tag
Psu 1541-expression tag
U 1542-expression tag
C 1543-expression tag
U 1544-expression tag
L: 5 - 135 (UniProt: Q5SHN3)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Val 2-expression tag
Ala 3-expression tag
Leu 4-expression tag
Q: 1 - 105 (UniProt: Q5SHP7)
PDBExternal DatabaseDetails
Gln 96Glu 96conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains21
Total formula weight783934.6
Non-Polymers*Number of molecules295
Total formula weight10800.1
All*Total formula weight794734.7
*Water molecules are not included.

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PDB entries from 2026-04-08

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