5BPH
Crystal structure of AMP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | D-alanine--D-alanine ligase | polymer | 306 | 33179.8 | 4 | UniProt (Q8ZIE7) Pfam (PF01820) Pfam (PF07478) | Yersinia pestis | D-Ala-D-Ala ligase,D-alanylalanine synthetase |
| 2 | E, K, P, U (A, B, C, D) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 4 | Chemie (AMP) | |||
| 3 | F, J, L, Q, V (A, B, C, D) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 4 | G, M, N, R, W... (A, B, C, D) | ACETATE ION | non-polymer | 59.0 | 6 | Chemie (ACT) | |||
| 5 | H, I, O, S, T... (A, B, C, D) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 6 | AA, BA, CA, DA (A, B, C, D) | water | water | 18.0 | 730 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 132719.2 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 2502.8 | |
| All* | Total formula weight | 135221.9 |
