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5BMQ

Crystal structure of L,D-transpeptidase (Yku) from Stackebrandtia nassauensis

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
ErfK/YbiS/YcfS/YnhG family proteinpolymer24327033.61UniProt (D3Q1D9)
Pfam (PF03734)
Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)
2B, D
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
3C
(A)
1,4-DIETHYLENE DIOXIDEnon-polymer88.11Chemie (DIO)
4E
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
5F
(A)
waterwater18.0246Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight27033.6
Non-Polymers*Number of molecules4
Total formula weight372.3
All*Total formula weight27405.9
*Water molecules are not included.

247536

PDB entries from 2026-01-14

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