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5B34

Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with Iodine-labeled Detergent HAD13a Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Bacteriorhodopsinpolymer24926929.51UniProt (P02945)
Pfam (PF01036)
Halobacterium salinarumBR,Bacterioopsin,BO
2B
(A)
RETINALnon-polymer284.41Chemie (RET)
PubChem (1070)
PubChem (23254473)
PubChem (177675058)
PubChem (638015)
PubChem (5353924)
PubChem (6436079)
PubChem (6436082)
PubChem (87082476)
PubChem (87110449)
PubChem (87110609)
PubChem (88398773)
PubChem (88407543)
PubChem (11426127)
PubChem (12227253)
PubChem (12227254)
PubChem (12227256)
PubChem (12227257)
PubChem (12227258)
PubChem (12227259)
PubChem (12227269)
PubChem (12227270)
PubChem (12227271)
PubChem (5280490)
PubChem (5381765)
PubChem (134688327)
PubChem (140510408)
PubChem (145826762)
PubChem (169423542)
PubChem (172878320)
3C, D
(A)
2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acidnon-polymer685.02Chemie (4QL)
PubChem (122199220)
4E, F
(A)
N-OCTANEnon-polymer114.22Chemie (OCT)
PubChem (356)
5G, P, Q, R
(A)
DODECANEnon-polymer170.34Chemie (D12)
PubChem (8182)
PubChem (5359624)
6H, I, K
(A)
DECANEnon-polymer142.33Chemie (D10)
PubChem (15600)
7J
(A)
HEXADECANEnon-polymer226.41Chemie (R16)
PubChem (11006)
8L, M, N
(A)
HEPTANEnon-polymer100.23Chemie (HP6)
PubChem (8900)
9O, S
(A)
nonanenon-polymer128.32Chemie (DD9)
PubChem (8141)
10T
(A)
waterwater18.037Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight26929.5
Non-Polymers*Number of molecules18
Total formula weight3774.7
All*Total formula weight30704.2
*Water molecules are not included.

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PDB entries from 2026-04-01

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