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5B31

The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.1.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.1polymer13915719.42UniProt (P68431)
Pfam (PF00125)
Homo sapiens (Human)Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l
2B, F
(B, F)
Histone H4polymer10611676.72UniProt (P62805)
Pfam (PF15511)
Homo sapiens (Human)
3C
(C)
Histone H2A type 1-B/Epolymer13314447.81UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (Human)Histone H2A.2,Histone H2A/a,Histone H2A/m
4D, H
(D, H)
Histone H2B type 1-Jpolymer12914217.52UniProt (P06899)
Pfam (PF00125)
Homo sapiens (Human)Histone H2B.1,Histone H2B.r,H2B/r
5G
(G)
Histone H2A.Zpolymer13113864.11UniProt (P0C0S5)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (Human)H2A/z
6I, J
(I, J)
DNA (146-MER)polymer14645053.92Homo sapiens
7K, N, Q, R, S...
(A, E, I, J)
MANGANESE (II) IONnon-polymer54.98Chemie (MN)
8L, M, O, P
(A, D, E, G)
CHLORIDE IONnon-polymer35.54Chemie (CL)
9AA, BA, CA, DA, EA...
(E, F, G, H, I...)
waterwater18.0292Chemie (HOH)
Sequence modifications
A, E: 0 - 135 (UniProt: P68431)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
B, F: 0 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
C: 0 - 129 (UniProt: P04908)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
D, H: 0 - 125 (UniProt: P06899)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
G: 0 - 127 (UniProt: P0C0S5)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight201646.9
Non-Polymers*Number of molecules12
Total formula weight581.3
All*Total formula weight202228.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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