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5B0Y

Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13615488.22UniProt (Q71DI3)
Pfam (PF00125)
Homo sapiens (Human)Histone H3/m,Histone H3/o
2B, F
(B, F)
Histone H4polymer10611676.72UniProt (P62805)
Pfam (PF15511)
Homo sapiens (Human)
3C, G
(C, G)
Histone H2A type 1-B/Epolymer13314447.82UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (Human)Histone H2A.2,Histone H2A/a,Histone H2A/m
4D, H
(D, H)
Histone H2B type 1-Jpolymer12914217.52UniProt (P06899)
Pfam (PF00125)
Homo sapiens (Human)Histone H2B.1,Histone H2B.r,H2B/r
5I, J
(I, J)
DNA (146-MER)polymer14645053.92Homo sapiens
6K, M
(C, G)
CHLORIDE IONnon-polymer35.52Chemie (CL)
7L, N, O, P, Q...
(E, I, J)
MANGANESE (II) IONnon-polymer54.98Chemie (MN)
8AA, BA, U, V, W...
(I, J, A, C, D...)
waterwater18.032Chemie (HOH)
Sequence modifications
B, F: 0 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
C, G: 0 - 129 (UniProt: P04908)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
D, H: 0 - 125 (UniProt: P06899)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight201768.1
Non-Polymers*Number of molecules10
Total formula weight510.4
All*Total formula weight202278.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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