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5B0Y

Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EHistone H3.2polymer13615488.22UniProt (Q71DI3)
Pfam (PF00125)
In PDB
Homo sapiens (Human)Histone H3/m,Histone H3/o
2B, FHistone H4polymer10611676.72UniProt (P62805)
Pfam (PF15511)
In PDB
Homo sapiens (Human)
3C, GHistone H2A type 1-B/Epolymer13314447.82UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Homo sapiens (Human)Histone H2A.2,Histone H2A/a,Histone H2A/m
4D, HHistone H2B type 1-Jpolymer12914217.52UniProt (P06899)
Pfam (PF00125)
In PDB
Homo sapiens (Human)Histone H2B.1,Histone H2B.r,H2B/r
5I, JDNA (146-MER)polymer14645053.92Homo sapiens
6C, GCHLORIDE IONnon-polymer35.52Chemie (CL)
7E, I, JMANGANESE (II) IONnon-polymer54.98Chemie (MN)
8waterwater18.032Chemie (HOH)
Sequence modifications
B, F: 0 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
C, G: 0 - 129 (UniProt: P04908)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
D, H: 0 - 125 (UniProt: P06899)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight201768.1
Non-Polymers*Number of molecules10
Total formula weight510.4
All*Total formula weight202278.5
*Water molecules are not included.

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PDB entries from 2024-09-04

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