5APO
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 25S ribosomal RNA | polymer | 3396 | 1094331.6 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
| 2 | B (7) | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
| 3 | C (8) | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
| 4 | D (A) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae S288c | L5,RP8,YL6 |
| 5 | E (B) | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae S288c | Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 6 | F (C) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae S288c | L2,RP2,YL2 |
| 7 | G (D) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae S288c | L1,L1a,Ribosomal 5S RNA-binding protein,YL3 |
| 8 | H (E) | 60S RIBOSOMAL PROTEIN EL6 | polymer | 176 | 19372.0 | 1 | Saccharomyces cerevisiae S288C | L17,RP18,YL16,60S RIBOSOMAL PROTEIN L6-A | |
| 9 | I (F) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae S288c | L6,RP11,YL8 |
| 10 | J (G) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae S288c | L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5 |
| 11 | K (H) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae S288c | L8,RP24,YL11 |
| 12 | L (I) | 60S ribosomal protein L10 | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae S288c | L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 13 | M (J) | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae S288c | L16,RP39,YL22 |
| 14 | N (L) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae S288c | |
| 15 | O (M) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae S288c | |
| 16 | P (N) | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae S288c | L13,RP15R,YL10,YP18 |
| 17 | Q (O) | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae S288c | L13a,L21,RP22,YL15 |
| 18 | R (P) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae S288c | L20A,YL17 |
| 19 | S (Q) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae S288c | RP28 |
| 20 | T (R) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae S288c | L23,RP15L,RP33,YL14 |
| 21 | U (S) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae S288c | L18a |
| 22 | V (T) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae S288c | |
| 23 | W (U) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae S288c | L1c,RP4,YL31 |
| 24 | X (V) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae S288c | L17a,YL32 |
| 25 | Y (W) | 60S ribosomal protein L24-A | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae S288c | L30,RP29,YL21 |
| 26 | Z (X) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae S288c | RP16L,YL25,YP42' |
| 27 | AA (Y) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae S288c | L33,YL33 |
| 28 | BA (Z) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae S288c | |
| 29 | CA (a) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae S288c | L27a,L29,RP44,RP62,YL24 |
| 30 | DA (b) | 60S ribosomal protein L29 | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae S288c | YL43 |
| 31 | EA (c) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae S288c | L32,RP73,YL38 |
| 32 | FA (d) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae S288c | L34,YL28 |
| 33 | GA (e) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae S288c | |
| 34 | HA (f) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae S288c | L37,RP47,YL37 |
| 35 | IA (g) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae S288c | |
| 36 | JA (h) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae S288c | |
| 37 | KA (i) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae S288c | L39,YL39 |
| 38 | LA (j) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae S288c | L43,YL35,YP55 |
| 39 | MA (k) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae S288c | |
| 40 | NA (l) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae S288c | L46,YL40 |
| 41 | OA (m) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae S288c | |
| 42 | PA (o) | 60S ribosomal protein L42-A | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae S288c | L41,YL27,YP44 |
| 43 | QA (p) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae S288c | L37a,YL35 |
| 44 | RA (q) | 60S acidic ribosomal protein P0 | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae S288c | A0,L10E |
| 45 | SA (x) | Probable metalloprotease ARX1 | polymer | 616 | 67835.2 | 1 | UniProt (Q03862) | Saccharomyces cerevisiae S288c | Associated with ribosomal export complex protein 1 |
| 46 | TA (y) | CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1 | polymer | 401 | 46541.1 | 1 | Saccharomyces cerevisiae S288c | REQUIRED FOR ISOTROPIC BUD GROWTH PROTEIN 1,PRE-60S FACTOR REI1 | |
| 47 | UA (z) | ALB1 | polymer | 95 | 8103.0 | 1 | Saccharomyces cerevisiae S288c | ||
| 48 | AB, AC, AD, AE, AF... (5, 8, B, C, N...) | MAGNESIUM ION | non-polymer | 24.3 | 280 | Chemie (MG) | |||
| 49 | OL, PL, QL, RL, SL... (j, m, o, p, y) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence modifications
5: 1 - 1953 (GenBank: 329138943)
5: 1953 - 2027 (PDB: 5APO)
5: 2093 - 3396 (GenBank: 329138943)
x: 1 - 593 (UniProt: Q03862)
5: 1953 - 2027 (PDB: 5APO)
5: 2093 - 3396 (GenBank: 329138943)
x: 1 - 593 (UniProt: Q03862)
| PDB | External Database | Details |
|---|---|---|
| Met -22 | - | initiating methionine |
| Gly -21 | - | expression tag |
| Ser -20 | - | expression tag |
| Ser -19 | - | expression tag |
| His -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| Ser -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Gly -10 | - | expression tag |
| Leu -9 | - | expression tag |
| Val -8 | - | expression tag |
| Pro -7 | - | expression tag |
| Arg -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Ser -4 | - | expression tag |
| His -3 | - | expression tag |
| Met -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Glu 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 47 |
| Total formula weight | 2079816.5 | |
| Non-Polymers* | Number of molecules | 286 |
| Total formula weight | 7197.9 | |
| All* | Total formula weight | 2087014.3 |
