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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5APO

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1525S ribosomal RNApolymer33961094331.61GenBank (329138943)Saccharomyces cerevisiae S288c
275S ribosomal RNApolymer12138951.11GenBank (329138943)Saccharomyces cerevisiae S288c
385.8S ribosomal RNApolymer15850682.91GenBank (329138943)Saccharomyces cerevisiae S288c
4A60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae S288cL5,RP8,YL6
5B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae S288cMaintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae S288cL2,RP2,YL2
7D60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae S288cL1,L1a,Ribosomal 5S RNA-binding protein,YL3
8E60S RIBOSOMAL PROTEIN EL6polymer17619372.01Saccharomyces cerevisiae S288CL17,RP18,YL16,60S RIBOSOMAL PROTEIN L6-A
9F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae S288cL6,RP11,YL8
10G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288cL4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5
11H60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae S288cL8,RP24,YL11
12I60S ribosomal protein L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiae S288cL9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
13J60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae S288cL16,RP39,YL22
14L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae S288c
15M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae S288c
16N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae S288cL13,RP15R,YL10,YP18
17O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae S288cL13a,L21,RP22,YL15
18P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae S288cL20A,YL17
19Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae S288cRP28
20R60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae S288cL23,RP15L,RP33,YL14
21S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae S288cL18a
22T60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae S288c
23U60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae S288cL1c,RP4,YL31
24V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae S288cL17a,YL32
25W60S ribosomal protein L24-Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae S288cL30,RP29,YL21
26X60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae S288cRP16L,YL25,YP42'
27Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae S288cL33,YL33
28Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae S288c
29a60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae S288cL27a,L29,RP44,RP62,YL24
30b60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae S288cYL43
31c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288cL32,RP73,YL38
32d60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae S288cL34,YL28
33e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae S288c
34f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae S288cL37,RP47,YL37
35g60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae S288c
36h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae S288c
37i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae S288cL39,YL39
38j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae S288cL43,YL35,YP55
39k60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae S288c
40l60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae S288cL46,YL40
41mUbiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae S288c
42o60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae S288cL41,YL27,YP44
43p60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae S288cL37a,YL35
44q60S acidic ribosomal protein P0polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		Saccharomyces cerevisiae S288cA0,L10E
45xProbable metalloprotease ARX1polymer61667835.21UniProt (Q03862)
In PDB		Saccharomyces cerevisiae S288cAssociated with ribosomal export complex protein 1
46yCYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1polymer40146541.11Saccharomyces cerevisiae S288cREQUIRED FOR ISOTROPIC BUD GROWTH PROTEIN 1,PRE-60S FACTOR REI1
47zALB1polymer958103.01Saccharomyces cerevisiae S288c
485, 8, B, C, N...MAGNESIUM IONnon-polymer24.3280Chemie (MG)
49j, m, o, p, yZINC IONnon-polymer65.46Chemie (ZN)
Sequence modifications
5: 1 - 1953 (GenBank: 329138943)
5: 1953 - 2027 (PDB: 5APO)
5: 2093 - 3396 (GenBank: 329138943)
x: 1 - 593 (UniProt: Q03862)
PDBExternal DatabaseDetails
Met -22-initiating methionine
Gly -21-expression tag
Ser -20-expression tag
Ser -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
Ser -12-expression tag
Ser -11-expression tag
Gly -10-expression tag
Leu -9-expression tag
Val -8-expression tag
Pro -7-expression tag
Arg -6-expression tag
Gly -5-expression tag
Ser -4-expression tag
His -3-expression tag
Met -2-expression tag
Leu -1-expression tag
Glu 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains47
Total formula weight2079816.5
Non-Polymers*Number of molecules286
Total formula weight7197.9
All*Total formula weight2087014.3
*Water molecules are not included.

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PDB entries from 2024-07-17

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