5APN
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 5 | 25S rRNA | polymer | 3396 | 1094369.6 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
2 | 7 | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
3 | 8 | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (329138943) | Saccharomyces cerevisiae S288c | |
4 | A | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae S288c | L5,RP8,YL6 |
5 | B | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) In PDB | Saccharomyces cerevisiae S288c | Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
6 | C | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) In PDB | Saccharomyces cerevisiae S288c | L2,RP2,YL2 |
7 | D | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) In PDB | Saccharomyces cerevisiae S288c | L1,L1a,Ribosomal 5S RNA-binding protein,YL3 |
8 | E | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) In PDB | Saccharomyces cerevisiae S288c | L17,RP18,YL16 |
9 | F | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF00327) Pfam (PF08079) In PDB | Saccharomyces cerevisiae S288c | L6,RP11,YL8 |
10 | G | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) In PDB | Saccharomyces cerevisiae S288c | L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5 |
11 | H | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) In PDB | Saccharomyces cerevisiae S288c | L8,RP24,YL11 |
12 | I | 60S ribosomal protein L10 | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) In PDB | Saccharomyces cerevisiae S288c | L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
13 | J | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae S288c | L16,RP39,YL22 |
14 | L | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) In PDB | Saccharomyces cerevisiae S288c | |
15 | M | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) In PDB | Saccharomyces cerevisiae S288c | |
16 | N | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) In PDB | Saccharomyces cerevisiae S288c | L13,RP15R,YL10,YP18 |
17 | O | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) In PDB | Saccharomyces cerevisiae S288c | L13a,L21,RP22,YL15 |
18 | P | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) In PDB | Saccharomyces cerevisiae S288c | L20A,YL17 |
19 | Q | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) In PDB | Saccharomyces cerevisiae S288c | RP28 |
20 | R | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) In PDB | Saccharomyces cerevisiae S288c | L23,RP15L,RP33,YL14 |
21 | S | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) In PDB | Saccharomyces cerevisiae S288c | L18a |
22 | T | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) In PDB | Saccharomyces cerevisiae S288c | |
23 | U | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) In PDB | Saccharomyces cerevisiae S288c | L1c,RP4,YL31 |
24 | V | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) In PDB | Saccharomyces cerevisiae S288c | L17a,YL32 |
25 | W | 60S ribosomal protein L24-A | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) In PDB | Saccharomyces cerevisiae S288c | L30,RP29,YL21 |
26 | X | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB | Saccharomyces cerevisiae S288c | RP16L,YL25,YP42' |
27 | Y | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB | Saccharomyces cerevisiae S288c | L33,YL33 |
28 | Z | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) In PDB | Saccharomyces cerevisiae S288c | |
29 | a | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) In PDB | Saccharomyces cerevisiae S288c | L27a,L29,RP44,RP62,YL24 |
30 | b | 60S ribosomal protein L29 | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) In PDB | Saccharomyces cerevisiae S288c | YL43 |
31 | c | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) In PDB | Saccharomyces cerevisiae S288c | L32,RP73,YL38 |
32 | d | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) In PDB | Saccharomyces cerevisiae S288c | L34,YL28 |
33 | e | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) In PDB | Saccharomyces cerevisiae S288c | |
34 | f | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) In PDB | Saccharomyces cerevisiae S288c | L37,RP47,YL37 |
35 | g | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) In PDB | Saccharomyces cerevisiae S288c | |
36 | h | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) In PDB | Saccharomyces cerevisiae S288c | |
37 | i | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) In PDB | Saccharomyces cerevisiae S288c | L39,YL39 |
38 | j | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) In PDB | Saccharomyces cerevisiae S288c | L43,YL35,YP55 |
39 | k | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) In PDB | Saccharomyces cerevisiae S288c | |
40 | l | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) In PDB | Saccharomyces cerevisiae S288c | L46,YL40 |
41 | m | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) In PDB | Saccharomyces cerevisiae S288c | |
42 | o | 60S ribosomal protein L42-A | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) In PDB | Saccharomyces cerevisiae S288c | L41,YL27,YP44 |
43 | p | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) In PDB | Saccharomyces cerevisiae S288c | L37a,YL35 |
44 | q | 60S acidic ribosomal protein P0 | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) In PDB | Saccharomyces cerevisiae S288c | A0,L10E |
45 | x | Probable metalloprotease ARX1 | polymer | 616 | 67835.2 | 1 | UniProt (Q03862) In PDB | Saccharomyces cerevisiae S288c | Associated with ribosomal export complex protein 1 |
46 | y | Cytoplasmic 60S subunit biogenesis factor REI1 | polymer | 414 | 48492.2 | 1 | UniProt (P38344) Pfam (PF12756) In PDB | Saccharomyces cerevisiae S288c | Required for isotropic bud growth protein 1,pre-60S factor REI1 |
47 | z | ALB1 | polymer | 85 | 7251.9 | 1 | Saccharomyces cerevisiae S288C | ||
48 | 5, 8, B, C, N... | MAGNESIUM ION | non-polymer | 24.3 | 280 | Chemie (MG) | |||
49 | j, m, o, p, y | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence modifications
5: 1 - 1953 (GenBank: 329138943)
5: 1986 - 2025 (PDB: 5APN)
5: 2093 - 3396 (GenBank: 329138943)
x: 1 - 593 (UniProt: Q03862)
y: 1 - 393 (UniProt: P38344)
5: 1986 - 2025 (PDB: 5APN)
5: 2093 - 3396 (GenBank: 329138943)
x: 1 - 593 (UniProt: Q03862)
PDB | External Database | Details |
---|---|---|
Met -22 | - | initiating methionine |
Gly -21 | - | expression tag |
Ser -20 | - | expression tag |
Ser -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
Ser -12 | - | expression tag |
Ser -11 | - | expression tag |
Gly -10 | - | expression tag |
Leu -9 | - | expression tag |
Val -8 | - | expression tag |
Pro -7 | - | expression tag |
Arg -6 | - | expression tag |
Gly -5 | - | expression tag |
Ser -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Leu -1 | - | expression tag |
Glu 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
Asp -14 | - | expression tag |
Tyr -13 | - | expression tag |
Asp -12 | - | expression tag |
Ile -11 | - | expression tag |
Pro -10 | - | expression tag |
Thr -9 | - | expression tag |
Thr -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 47 |
Total formula weight | 2081583.1 | |
Non-Polymers* | Number of molecules | 286 |
Total formula weight | 7197.9 | |
All* | Total formula weight | 2088780.9 |