5ADY
Cryo-EM structures of the 50S ribosome subunit bound with HflX
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S RIBOSOMAL PROTEIN L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | ESCHERICHIA COLI K-12 | |
| 2 | B (1) | 50S RIBOSOMAL PROTEIN L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | ESCHERICHIA COLI K-12 | |
| 3 | C (2) | 50S RIBOSOMAL PROTEIN L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | ESCHERICHIA COLI K-12 | |
| 4 | D (3) | 50S RIBOSOMAL PROTEIN L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | ESCHERICHIA COLI K-12 | RIBOSOMAL PROTEIN A |
| 5 | E (4) | 50S RIBOSOMAL PROTEIN L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | ESCHERICHIA COLI K-12 | RIBOSOMAL PROTEIN B |
| 6 | F (5) | 50S RIBOSOMAL PROTEIN L1 | polymer | 234 | 24765.7 | 1 | UniProt (P0A7L0) Pfam (PF00687) | ESCHERICHIA COLI K-12 | |
| 7 | G (6) | GTPASE HFLX | polymer | 426 | 48393.0 | 1 | UniProt (P25519) Pfam (PF19275) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) | ESCHERICHIA COLI K-12 | GTP-BINDING PROTEIN HFLX |
| 8 | H (7) | 50S RIBOSOMAL PROTEIN L10 | polymer | 165 | 17736.6 | 1 | UniProt (P0A7J3) Pfam (PF00466) | ESCHERICHIA COLI K-12 | 50S RIBOSOMAL PROTEIN L8 |
| 9 | I (A) | 5S RRNA | polymer | 120 | 38790.1 | 1 | GenBank (507148446) | ESCHERICHIA COLI K-12 | |
| 10 | J (B) | 23S RRNA | polymer | 2903 | 941306.2 | 1 | GenBank (507148266) | ESCHERICHIA COLI K-12 | |
| 11 | K (C) | 50S RIBOSOMAL PROTEIN L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | ESCHERICHIA COLI K-12 | |
| 12 | L (D) | 50S RIBOSOMAL PROTEIN L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | ESCHERICHIA COLI K-12 | |
| 13 | M (E) | 50S RIBOSOMAL PROTEIN L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | ESCHERICHIA COLI K-12 | |
| 14 | N (F) | 50S RIBOSOMAL PROTEIN L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | ESCHERICHIA COLI K-12 | |
| 15 | O (G) | 50S RIBOSOMAL PROTEIN L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | ESCHERICHIA COLI K-12 | |
| 16 | P (H) | 50S RIBOSOMAL PROTEIN L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | ESCHERICHIA COLI K-12 | |
| 17 | Q (I) | 50S RIBOSOMAL PROTEIN L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | ESCHERICHIA COLI K-12 | |
| 18 | R (J) | 50S RIBOSOMAL PROTEIN L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | ESCHERICHIA COLI K-12 | |
| 19 | S (K) | 50S RIBOSOMAL PROTEIN L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | ESCHERICHIA COLI K-12 | |
| 20 | T (L) | 50S RIBOSOMAL PROTEIN L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | ESCHERICHIA COLI K-12 | |
| 21 | U (M) | 50S RIBOSOMAL PROTEIN L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | ESCHERICHIA COLI K-12 | |
| 22 | V (N) | 50S RIBOSOMAL PROTEIN L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | ESCHERICHIA COLI K-12 | |
| 23 | W (O) | 50S RIBOSOMAL PROTEIN L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | ESCHERICHIA COLI K-12 | |
| 24 | X (P) | 50S RIBOSOMAL PROTEIN L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | ESCHERICHIA COLI K-12 | |
| 25 | Y (Q) | 50S RIBOSOMAL PROTEIN L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | ESCHERICHIA COLI K-12 | |
| 26 | Z (R) | 50S RIBOSOMAL PROTEIN L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | ESCHERICHIA COLI K-12 | |
| 27 | AA (S) | 50S RIBOSOMAL PROTEIN L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | ESCHERICHIA COLI K-12 | |
| 28 | BA (T) | 50S RIBOSOMAL PROTEIN L23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | ESCHERICHIA COLI K-12 | |
| 29 | CA (U) | 50S RIBOSOMAL PROTEIN L24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | ESCHERICHIA COLI K-12 | |
| 30 | DA (V) | 50S RIBOSOMAL PROTEIN L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | ESCHERICHIA COLI K-12 | |
| 31 | EA (W) | 50S RIBOSOMAL PROTEIN L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | ESCHERICHIA COLI K-12 | |
| 32 | FA (X) | 50S RIBOSOMAL PROTEIN L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | ESCHERICHIA COLI K-12 | |
| 33 | GA (Y) | 50S RIBOSOMAL PROTEIN L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | ESCHERICHIA COLI K-12 | |
| 34 | HA (Z) | 50S RIBOSOMAL PROTEIN L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | ESCHERICHIA COLI K-12 | |
| 35 | IA (6) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
| 36 | JA (6) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
B: 1 - 2903 (GenBank: 507148266)
| PDB | External Database | Details |
|---|---|---|
| C 264 | G 27358 | conflict |
| C 542 | U 27636 | conflict |
| U 846 | C 27940 | conflict |
| C 1211 | U 28305 | conflict |
| G 1220 | A 28314 | conflict |
| C 1229 | U 28323 | conflict |
| G 1723 | A 28817 | conflict |
| U 1725 | C 28819 | conflict |
| C 1726 | G 28820 | conflict |
| C 1727 | A 28821 | conflict |
| C 1730 | U 28824 | conflict |
| G 1733 | U 28827 | conflict |
| G 1734 | C 28828 | conflict |
| A 1735 | G 28829 | conflict |
| C 2794 | U 29888 | conflict |
| U 2796 | C 29890 | conflict |
| A 2799 | G 29893 | conflict |
| G 2802 | A 29896 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 34 |
| Total formula weight | 1448146.0 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 546.5 | |
| All* | Total formula weight | 1448692.5 |
