5A4F
The mechanism of Hydrogen Activation by NiFe-hydrogenases.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (L, M) | Hydrogenase-1 large chain | polymer | 582 | 64723.4 | 2 | UniProt (P0ACD8) Pfam (PF00374) | Escherichia coli str. K-12 substr. MC4100 | HYD1,Membrane-bound hydrogenase 1 large subunit,NiFe hydrogenase |
| 2 | C, D (S, T) | Hydrogenase-1 small chain | polymer | 335 | 36814.7 | 2 | UniProt (P69739) Pfam (PF01058) Pfam (PF14720) | Escherichia coli str. K-12 substr. MC4100 | HYD1,Membrane-bound hydrogenase 1 small subunit,NiFe hydrogenase |
| 3 | E, H (L, M) | CARBONMONOXIDE-(DICYANO) IRON | non-polymer | 135.9 | 2 | Chemie (FCO) | |||
| 4 | F, I (L, M) | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
| 5 | G, J (L, M) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 6 | K, Q (M, S) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 7 | L, R (S, T) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 8 | M, S (S, T) | FE3-S4 CLUSTER | non-polymer | 295.8 | 2 | Chemie (F3S) | |||
| 9 | N, T (S, T) | FE4-S3 CLUSTER | non-polymer | 319.6 | 2 | Chemie (SF3) | |||
| 10 | O, P, U, V (S, T) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
| 11 | W, X, Y, Z (L, M, S, T) | water | water | 18.0 | 973 | Chemie (HOH) |
Sequence modifications
L, M: 1 - 582 (UniProt: P0ACD8)
S, T: 1 - 327 (UniProt: P69739)
| PDB | External Database | Details |
|---|---|---|
| Ala 118 | Asp 118 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Arg 328 | - | expression tag |
| Ser 329 | - | expression tag |
| His 330 | - | expression tag |
| His 331 | - | expression tag |
| His 332 | - | expression tag |
| His 333 | - | expression tag |
| His 334 | - | expression tag |
| His 335 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 203076.1 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 2705.7 | |
| All* | Total formula weight | 205781.8 |






