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5A4F

The mechanism of Hydrogen Activation by NiFe-hydrogenases.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(L, M)
Hydrogenase-1 large chainpolymer58264723.42UniProt (P0ACD8)
Pfam (PF00374)
Escherichia coli str. K-12 substr. MC4100HYD1,Membrane-bound hydrogenase 1 large subunit,NiFe hydrogenase
2C, D
(S, T)
Hydrogenase-1 small chainpolymer33536814.72UniProt (P69739)
Pfam (PF01058)
Pfam (PF14720)
Escherichia coli str. K-12 substr. MC4100HYD1,Membrane-bound hydrogenase 1 small subunit,NiFe hydrogenase
3E, H
(L, M)
CARBONMONOXIDE-(DICYANO) IRONnon-polymer135.92Chemie (FCO)
4F, I
(L, M)
NICKEL (II) IONnon-polymer58.72Chemie (NI)
5G, J
(L, M)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6K, Q
(M, S)
SULFATE IONnon-polymer96.12Chemie (SO4)
7L, R
(S, T)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
8M, S
(S, T)
FE3-S4 CLUSTERnon-polymer295.82Chemie (F3S)
9N, T
(S, T)
FE4-S3 CLUSTERnon-polymer319.62Chemie (SF3)
10O, P, U, V
(S, T)
CHLORIDE IONnon-polymer35.54Chemie (CL)
11W, X, Y, Z
(L, M, S, T)
waterwater18.0973Chemie (HOH)
Sequence modifications
L, M: 1 - 582 (UniProt: P0ACD8)
PDBExternal DatabaseDetails
Ala 118Asp 118engineered mutation
S, T: 1 - 327 (UniProt: P69739)
PDBExternal DatabaseDetails
Arg 328-expression tag
Ser 329-expression tag
His 330-expression tag
His 331-expression tag
His 332-expression tag
His 333-expression tag
His 334-expression tag
His 335-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight203076.1
Non-Polymers*Number of molecules18
Total formula weight2705.7
All*Total formula weight205781.8
*Water molecules are not included.

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PDB entries from 2025-07-16

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