4Z36
Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO-3080573
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Lysophosphatidic acid receptor 1,Soluble cytochrome b562 | polymer | 459 | 51842.3 | 1 | UniProt (Q92633) UniProt (P0ABE7) Pfam (PF00001) Pfam (PF07361) In PDB | Homo sapiens (Human) | LPA-1,Lysophosphatidic acid receptor Edg-2,Cytochrome b-562,Cytochrome b-562,LPA-1,Lysophosphatidic acid receptor Edg-2 |
2 | A | 1-(4-{[(2S,3R)-2-(2,3-dihydro-1H-inden-2-yloxy)-3-(3,5-dimethoxy-4-methylphenyl)-3-hydroxypropyl]oxy}phenyl)cyclopropanecarboxylic acid | non-polymer | 518.6 | 1 | Chemie (ON3) | |||
3 | A | (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate | non-polymer | 300.4 | 1 | Chemie (1WV) | |||
4 | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
A: 2 - 232 (UniProt: Q92633)
A: 1001 - 1042 (UniProt: P0ABE7)
A: 1056 - 1105 (UniProt: P0ABE7)
A: 248 - 326 (UniProt: Q92633)
PDB | External Database | Details |
---|---|---|
Met -17 | - | initiating methionine |
Lys -16 | - | expression tag |
Thr -15 | - | expression tag |
Ile -14 | - | expression tag |
Ile -13 | - | expression tag |
Ala -12 | - | expression tag |
Leu -11 | - | expression tag |
Ser -10 | - | expression tag |
Tyr -9 | - | expression tag |
Ile -8 | - | expression tag |
Phe -7 | - | expression tag |
Cys -6 | - | expression tag |
Leu -5 | - | expression tag |
Val -4 | - | expression tag |
Phe -3 | - | expression tag |
Ala -2 | - | expression tag |
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Pro 1 | - | expression tag |
Cys 204 | Asp 204 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Trp 1007 | Met 29 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 1043 | - | linker |
Gly 1049 | - | linker |
Ser 1050 | - | linker |
Gly 1051 | - | linker |
Gly 1052 | - | linker |
Ser 1053 | - | linker |
Asp 1054 | - | linker |
Ser 1055 | - | linker |
Ile 1102 | His 124 | engineered mutation |
Leu 1106 | - | linker |
PDB | External Database | Details |
---|---|---|
Cys 282 | Val 283 | conflict |
Gly 327 | - | expression tag |
Arg 328 | - | expression tag |
Pro 329 | - | expression tag |
Leu 330 | - | expression tag |
Glu 331 | - | expression tag |
Val 332 | - | expression tag |
Leu 333 | - | expression tag |
Phe 334 | - | expression tag |
Gln 335 | - | expression tag |
Gly 336 | - | expression tag |
Pro 337 | - | expression tag |
His 338 | - | expression tag |
His 339 | - | expression tag |
His 340 | - | expression tag |
His 341 | - | expression tag |
His 342 | - | expression tag |
His 343 | - | expression tag |
His 344 | - | expression tag |
His 345 | - | expression tag |
His 346 | - | expression tag |
His 347 | - | expression tag |
Asp 348 | - | expression tag |
Tyr 349 | - | expression tag |
Lys 350 | - | expression tag |
Asp 351 | - | expression tag |
Asp 352 | - | expression tag |
Asp 353 | - | expression tag |
Asp 354 | - | expression tag |
Lys 355 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 51842.3 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 819.0 | |
All* | Total formula weight | 52661.4 |