4X16
JC Mad-1 polyomavirus VP1 in complex with GD1a oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F, K, N, Q, S... (A, B, C, D, E) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 3 | G, L, M, R, V... (A, B, C, D, E) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 4 | H, I, O (A, B) | POTASSIUM ION | non-polymer | 39.1 | 3 | Chemie (K) | |||
| 5 | J, P, T (B, C, D) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 3 | Chemie (SIA) | |||
| 6 | AA, BA, CA, DA, EA (A, B, C, D, E) | water | water | 18.0 | 1070 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 2246.4 | |
| All* | Total formula weight | 152625.7 |
