4X13
JC Polyomavirus genotype 3 VP1 in complex with LSTc pentasaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein | polymer | 272 | 30033.8 | 5 | UniProt (P90498) Pfam (PF00718) | JC polyomavirus type 3 (JCPyV) | VP1,VP1 capsid protein |
| 2 | F, G (F, G) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 2 | In PDB GlyTouCan (G83513YI) | |||
| 3 | H (H) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose | branched | 836.7 | 1 | In PDB GlyTouCan (G03509EL) | |||
| 4 | AA, CA, DA, FA, HA... (C, D, E, A, B) | GLYCEROL | non-polymer | 92.1 | 11 | Chemie (GOL) | |||
| 5 | EA, IA, J, JA, K... (D, E, A, B, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 15 | Chemie (EDO) | |||
| 6 | BA, GA, MA, N, W (C, D, E, A, B) | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) | |||
| 7 | NA, OA, PA, QA, RA (A, B, C, D, E) | water | water | 18.0 | 1063 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P90498)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150169.0 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2834.5 | |
| Non-Polymers* | Number of molecules | 31 |
| Total formula weight | 2139.5 | |
| All* | Total formula weight | 155143.0 |
