4WY0
PdxS (G. stearothermophilus) co-crystallized with R5P in the presence of ammonia.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G, I... | Pyridoxal biosynthesis lyase PdxS | polymer | 305 | 33116.0 | 8 | UniProt (Q5L3Y2) Pfam (PF01680) In PDB | Geobacillus kaustophilus (strain HTA426) | |
2 | B, D, H | Pyridoxal biosynthesis lyase PdxS | polymer | 305 | 32904.9 | 3 | UniProt (Q5L3Y2) Pfam (PF01680) In PDB | Geobacillus kaustophilus (strain HTA426) | |
3 | F | Pyridoxal biosynthesis lyase PdxS | polymer | 304 | 32927.9 | 1 | UniProt (Q5L3Y2) Pfam (PF01680) In PDB | Geobacillus kaustophilus (strain HTA426) | |
4 | H, L, A, C, F | CACODYLATE ION | non-polymer | 137.0 | 5 | Chemie (CAC) | |||
5 | B, D, F, H | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
6 | I, J, K, B, D... | RIBOSE-5-PHOSPHATE | non-polymer | 230.1 | 7 | Chemie (R5P) | |||
7 | C, G | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
8 | water | water | 18.0 | 1236 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, J, K, L: 1 - 294 (UniProt: Q5L3Y2)
B, D, H: 1 - 294 (UniProt: Q5L3Y2)
F: 1 - 294 (UniProt: Q5L3Y2)
PDB | External Database | Details |
---|---|---|
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Thr -6 | - | expression tag |
Pro -5 | - | expression tag |
Gln -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Ala -1 | - | expression tag |
Ser 0 | - | expression tag |
Thr 216 | Ala 216 | conflict |
Ala 295 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Thr -6 | - | expression tag |
Pro -5 | - | expression tag |
Gln -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Ala -1 | - | expression tag |
Ser 0 | - | expression tag |
Thr 216 | Ala 216 | conflict |
Ala 295 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Thr -6 | - | expression tag |
Pro -5 | - | expression tag |
Gln -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Ala -1 | - | expression tag |
Ser 0 | - | expression tag |
Thr 216 | Ala 216 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 396570.5 | |
Non-Polymers* | Number of molecules | 19 |
Total formula weight | 2861.8 | |
All* | Total formula weight | 399432.3 |