4WY0
PdxS (G. stearothermophilus) co-crystallized with R5P in the presence of ammonia.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G, I... (A, C, E, G, I...) | Pyridoxal biosynthesis lyase PdxS | polymer | 305 | 33116.0 | 8 | UniProt (Q5L3Y2) Pfam (PF01680) | Geobacillus kaustophilus (strain HTA426) | |
| 2 | B, D, H (B, D, H) | Pyridoxal biosynthesis lyase PdxS | polymer | 305 | 32904.9 | 3 | UniProt (Q5L3Y2) Pfam (PF01680) | Geobacillus kaustophilus (strain HTA426) | |
| 3 | F (F) | Pyridoxal biosynthesis lyase PdxS | polymer | 304 | 32927.9 | 1 | UniProt (Q5L3Y2) Pfam (PF01680) | Geobacillus kaustophilus (strain HTA426) | |
| 4 | AA, EA, M, P, V (H, L, A, C, F) | CACODYLATE ION | non-polymer | 137.0 | 5 | Chemie (CAC) | |||
| 5 | N, R, U, Z (B, D, F, H) | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
| 6 | BA, CA, DA, O, S... (I, J, K, B, D...) | RIBOSE-5-PHOSPHATE | non-polymer | 230.1 | 7 | Chemie (R5P) | |||
| 7 | Q, X, Y (C, G) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 8 | FA, GA, HA, IA, JA... (A, B, C, D, E...) | water | water | 18.0 | 1236 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, J, K, L: 1 - 294 (UniProt: Q5L3Y2)
B, D, H: 1 - 294 (UniProt: Q5L3Y2)
F: 1 - 294 (UniProt: Q5L3Y2)
| PDB | External Database | Details |
|---|---|---|
| Glu -9 | - | expression tag |
| Asn -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Thr -6 | - | expression tag |
| Pro -5 | - | expression tag |
| Gln -4 | - | expression tag |
| His -3 | - | expression tag |
| Met -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Thr 216 | Ala 216 | conflict |
| Ala 295 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu -9 | - | expression tag |
| Asn -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Thr -6 | - | expression tag |
| Pro -5 | - | expression tag |
| Gln -4 | - | expression tag |
| His -3 | - | expression tag |
| Met -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Thr 216 | Ala 216 | conflict |
| Ala 295 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu -9 | - | expression tag |
| Asn -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Thr -6 | - | expression tag |
| Pro -5 | - | expression tag |
| Gln -4 | - | expression tag |
| His -3 | - | expression tag |
| Met -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Thr 216 | Ala 216 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 396570.5 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 2861.8 | |
| All* | Total formula weight | 399432.3 |
