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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WT1

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
113, 1G16S ribosomal RNApolymer1522493997.32GenBank (155076)Thermus thermophilus HB8
21E, 1230S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
32E, 2230S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
43E, 3230S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
54E, 4230S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
65E, 5230S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilusTS9
76E, 6230S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
87E, 7230S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
98E, 8230S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
101I, 1A30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
112I, 2A30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
123I, 3A30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
134I, 4A30S ribosomal protein S13polymer12614352.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
145I, 5A30S ribosomal protein S14 type Zpolymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
156I, 6A30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
167I, 7A30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
178I, 8A30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus
189I, 9A30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AI, AA30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
20BI, BA30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
211F, 1B30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilusS31
221KtRNA-Phepolymer7624645.91Escherichia coli K-12
232K, 2LtRNA-fMetpolymer7724862.02GenBank (675818144)Escherichia coli K-12
243K, 1L, 3LtRNA-Phepolymer7624485.53GenBank (675820269)Escherichia coli K-12
254K, 4LmRNApolymer278838.42Thermus thermophilus HB8
261H, 1423S ribosomal RNApolymer2917948539.92GenBank (55771382)Thermus thermophilus HB8
2716, 1J5S ribosomal RNApolymer12239540.62GenBank (55771382)Thermus thermophilus
2811, 1950S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
2921, 2950S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
3031, 3950S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
3141, 4950S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
3251, 5950S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
3361, 6950S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
3458, 1550S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
3568, 2550S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
3678, 3550S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
3788, 4550S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
3898, 5550S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
39A8, 6550S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilusTL24
40B8, 7550S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
41C8, 8550S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
42D8, 9550S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
43E8, A550S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
44F8, B550S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
45G8, C550S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
46H8, D550S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
47I8, E550S ribosomal protein L27polymer859557.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
48J8, F550S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
49K8, G550S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
50L8, H550S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
51M8, I550S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
52N8, J550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
53O8, K550S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
54P8, L550S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
55Q8, M550S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
561H, 13, 88, 1G, 14...MAGNESIUM IONnon-polymer24.31247Chemie (MG)
57G8, 3E, 5I, C5, 32...ZINC IONnon-polymer65.46Chemie (ZN)
58waterwater18.01786Chemie (HOH)
Sequence modifications
4I, 4A: 1 - 126 (UniProt: P80377)
PDBExternal DatabaseDetails
Ala 119Gly 119conflict
2K, 2L: 1 - 77 (GenBank: 675818144)
PDBExternal DatabaseDetails
C 18U 226688conflict
1H, 14: 1 - 2907 (GenBank: 55771382)
PDBExternal DatabaseDetails
U 161-insertion
G 493-insertion
G 1228-insertion
I8, E5: 1 - 85 (UniProt: P60493)
PDBExternal DatabaseDetails
Ala 6Gly 6conflict
Ala 8Gly 8conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains110
Total formula weight4495591.7
Non-Polymers*Number of molecules1253
Total formula weight30700.8
All*Total formula weight4526292.5
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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