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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WQY

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA23S Ribosomal RNApolymer2915947895.42GenBank (55771382)Thermus thermophilus HB8
2AB, CB5S Ribosomal RNApolymer12139188.42GenBank (55771382)Thermus thermophilus HB8
3AC, CC50S ribosomal protein L1polymer22824741.52UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
4AD, CD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
5AE, CE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
6AF, CF50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
7AG, CG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
8AH, CH50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
9AK, CK50S ribosomal protein L10polymer17318586.62UniProt (Q8VVE3)
Pfam (PF00466)
In PDB		Thermus thermophilus
10AL, CL50S ribosomal protein L11polymer14715526.12UniProt (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
11AN, CN50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
12AO, CO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
13AP, CP50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
14AQ, CQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
15AR, CR50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
16AS, CS50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilusTL24
17AT, CT50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
18AU, CU50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
19AV, CV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
20AW, CW50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
21AX, CX50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
22AY, CY50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
23AZ, CZ50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
24A0, C050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
25A1, C150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
26A2, C250S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
27A3, C350S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
28A4, C450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
29A5, C550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
30A6, C650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
31A7, C750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
32A8, C850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
33A9, C950S ribosomal protein L36polymer374435.42UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilusRibosomal protein B
34BA, DA16S Ribosomal RNApolymer1521493652.22GenBank (55771382)Thermus thermophilus HB8
35BB, DB30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
36BC, DC30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
37BD, DD30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
38BE, DE30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
39BF, DF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilusTS9
40BG, DG30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
41BH, DH30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
42BI, DI30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
43BJ, DJ30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
44BK, DK30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
45BL, DL30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
46BM, DM30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
47BN, DN30S ribosomal protein S14 type Zpolymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
48BO, DO30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
49BP, DP30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
50BQ, DQ30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus
51BR, DR30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
52BS, DS30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
53BT, DT30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
54BU, DU30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilusS31
55BV, DVmRNApolymer247804.72synthetic construct
56BX, DXP-site tRNApolymer7724846.92GenBank (557270520)Escherichia coli str. K-12 substr. MC4100
57BZ, DZ50S ribosomal protein L9,Elongation factor Gpolymer75884416.82UniProt (Q5SLQ1)
UniProt (Q5SHN5)
Pfam (PF01281)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB		Thermus thermophilusEF-G
58AA, CA, DA, AB, AF...MAGNESIUM IONnon-polymer24.32045Chemie (MG)
59AAPOTASSIUM IONnon-polymer39.11Chemie (K)
60AY, CY, DN, A4, BN...ZINC IONnon-polymer65.412Chemie (ZN)
61DD, BDIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
62BZ, DZGUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
63waterwater18.03010Chemie (HOH)
Sequence modifications
BZ, DZ: -66 - 7 (UniProt: Q5SLQ1)
BZ, DZ: 8 - 691 (UniProt: Q5SHN5)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains114
Total formula weight4655192.3
Non-Polymers*Number of molecules2062
Total formula weight52117.4
All*Total formula weight4707309.8
*Water molecules are not included.

220113

PDB entries from 2024-05-22

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