4WQ1
Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (13) | 16S ribosomal RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus HB8 | |
| 2 | B, EB (1E, 12) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P62662) Pfam (PF00318) UniProt (by SIFTS) (P80371) | Thermus thermophilus HB8 | |
| 3 | C, FB (2E, 22) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus HB8 | |
| 4 | D, GB (3E, 32) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) | Thermus thermophilus HB8 | |
| 5 | E, HB (4E, 42) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus HB8 | |
| 6 | F, IB (5E, 52) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus HB8 | |
| 7 | G, JB (6E, 62) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P62667) Pfam (PF00177) UniProt (by SIFTS) (P17291) | Thermus thermophilus HB8 | |
| 8 | H, KB (7E, 72) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus HB8 | |
| 9 | I, LB (8E, 82) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus HB8 | |
| 10 | J, MB (1I, 1A) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P62653) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus HB8 | |
| 11 | K, NB (2I, 2A) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) | Thermus thermophilus HB8 | |
| 12 | L, OB (3I, 3A) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (P61941) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus HB8 | |
| 13 | M, PB (4I, 4A) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) | Thermus thermophilus HB8 | |
| 14 | N, QB (5I, 5A) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P62656) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus HB8 | 30S ribosomal protein S14 |
| 15 | O, RB (6I, 6A) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P62657) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus HB8 | |
| 16 | P, SB (7I, 7A) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus HB8 | |
| 17 | Q, TB (8I, 8A) | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (A0A0N0BLS5) | Thermus thermophilus HB8 | |
| 18 | R, UB (9I, 9A) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus HB8 | |
| 19 | S, VB (AI, AA) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (P62660) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus HB8 | |
| 20 | T, WB (BI, BA) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus HB8 | |
| 21 | U, XB (1F, 1B) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62613) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus HB8 | |
| 22 | AC, V, X, YB (1K, 3K, 1L, 3L) | tRNA-Tyr | polymer | 85 | 27574.7 | 4 | GenBank (595583568) | Escherichia coli K-12 | |
| 23 | W, ZB (2K, 2L) | tRNA-fMET | polymer | 77 | 24847.9 | 2 | GenBank (675817920) | Escherichia coli K-12 | tRNA-fMET |
| 24 | BC, Y (4K, 4L) | mRNA | polymer | 30 | 9832.1 | 2 | Thermus thermophilus HB8 | ||
| 25 | CC, Z (1H, 14) | 23S ribosomal RNA | polymer | 2912 | 947013.0 | 2 | GenBank (48268) | Thermus thermophilus HB8 | |
| 26 | AA, DC (16, 1J) | 5S ribosomal RNA | polymer | 122 | 39540.6 | 2 | GenBank (46197919) | Thermus thermophilus HB8 | 5S rRNA |
| 27 | BA (11) | 50S ribosomal protein L2 | polymer | 272 | 29985.8 | 1 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) | Thermus thermophilus HB8 | |
| 28 | CA, FC (21, 29) | 50S ribosomal protein L3 | polymer | 205 | 22321.0 | 2 | UniProt (Q72I04) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) | Thermus thermophilus HB8 | |
| 29 | DA (31) | 50S ribosomal protein L4 | polymer | 202 | 22455.0 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus HB8 | L1e |
| 30 | EA, HC (41, 49) | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus HB8 | |
| 31 | FA, IC (51, 59) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus HB8 | |
| 32 | GA, JC (61, 69) | 50S ribosomal protein L9 | polymer | 146 | 16164.9 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus HB8 | |
| 33 | HA, KC (58, 15) | 50S ribosomal protein L13 | polymer | 138 | 15699.7 | 2 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) | Thermus thermophilus HB8 | |
| 34 | IA, LC (68, 25) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus HB8 | |
| 35 | JA, MC (78, 35) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) | Thermus thermophilus HB8 | |
| 36 | KA, NC (88, 45) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus HB8 | |
| 37 | LA, OC (98, 55) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) | Thermus thermophilus HB8 | |
| 38 | MA, PC (A8, 65) | 50S ribosomal protein L18 | polymer | 111 | 12508.6 | 2 | UniProt (Q72I20) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) | Thermus thermophilus HB8 | |
| 39 | NA, QC (B8, 75) | 50S ribosomal protein L19 | polymer | 137 | 16218.8 | 2 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus HB8 | |
| 40 | OA, RC (C8, 85) | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 2 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) | Thermus thermophilus HB8 | |
| 41 | PA, SC (D8, 95) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) | Thermus thermophilus HB8 | |
| 42 | QA, TC (E8, A5) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) | Thermus thermophilus HB8 | |
| 43 | RA, UC (F8, B5) | 50S ribosomal protein L23 | polymer | 94 | 10533.5 | 2 | UniProt (Q72I06) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) | Thermus thermophilus HB8 | |
| 44 | SA, VC (G8, C5) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) | Thermus thermophilus HB8 | |
| 45 | TA (H8) | 50S ribosomal protein L25 | polymer | 175 | 19829.9 | 1 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) | Thermus thermophilus HB8 | General stress protein CTC |
| 46 | UA, XC (I8, E5) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus HB8 | |
| 47 | VA, YC (J8, F5) | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus HB8 | |
| 48 | WA, ZC (K8, G5) | 50S ribosomal protein L29 | polymer | 66 | 7983.4 | 2 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) | Thermus thermophilus HB8 | |
| 49 | AD, XA (L8, H5) | 50S ribosomal protein L30 | polymer | 59 | 6667.9 | 2 | UniProt (Q72I22) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) | Thermus thermophilus HB8 | |
| 50 | BD, YA (M8, I5) | 50S ribosomal protein L31 | polymer | 66 | 7636.8 | 2 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) | Thermus thermophilus HB8 | |
| 51 | CD, ZA (N8, J5) | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 2 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus HB8 | |
| 52 | AB, DD (O8, K5) | 50S ribosomal protein L33 | polymer | 45 | 5602.6 | 2 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) | Thermus thermophilus HB8 | |
| 53 | BB, ED (P8, L5) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus HB8 | |
| 54 | CB (Q8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) | Thermus thermophilus HB8 | |
| 55 | DB (1G) | 16S ribosomal RNA | polymer | 1522 | 493997.3 | 1 | Thermus thermophilus HB8 | ||
| 56 | EC (19) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) | Thermus thermophilus HB8 | |
| 57 | GC (39) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus HB8 | L1e |
| 58 | WC (D5) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) | Thermus thermophilus HB8 | General stress protein CTC |
| 59 | FD (M5) | 50S ribosomal protein L35 | polymer | 61 | 6985.6 | 1 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) | Thermus thermophilus HB8 | |
| 60 | AAA, ABA, ACA, ADA, AE... (16, I8, 1G, 13, 14...) | MAGNESIUM ION | non-polymer | 24.3 | 1131 | Chemie (MG) | |||
| 61 | DFA, FFA, QI, UI, XUA... (32, 5A, 3E, 5I, C5...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 62 | AVA, AWA, BVA, BWA, CVA... (3E, 19, 3I, 39, 5I...) | water | water | 18.0 | 1486 | Chemie (HOH) |
Sequence modifications
2K, 2L: 1 - 77 (GenBank: 675817920)
1H, 14: 1 - 2902 (GenBank: 48268)
| PDB | External Database | Details |
|---|---|---|
| C 18 | U 626317 | conflict |
| PDB | External Database | Details |
|---|---|---|
| U 161 | - | insertion |
| G 493 | - | insertion |
| G 1228 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 110 |
| Total formula weight | 4491319.4 | |
| Non-Polymers* | Number of molecules | 1137 |
| Total formula weight | 27881.4 | |
| All* | Total formula weight | 4519200.8 |
