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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4W29

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AB, CB30S ribosomal protein S2polymer23527116.42UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2AC, CC30S ribosomal protein S3polymer20722975.62UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
3AD, CD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
4AE, CE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
5AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
6AG, CG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
7AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
8AI, CI30S ribosomal protein S9polymer12714279.42UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9AJ, CJ30S ribosomal protein S10polymer9911398.32UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
10AK, CK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
11AL, CL30S ribosomal protein S12polymer12513875.42UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
12AM, CM30S ribosomal protein S13polymer12514207.72UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
13AN, CN30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
14AO, CO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
15AP, CP30S ribosomal protein S16polymer849995.52UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
16AQ, CQ30S ribosomal protein S17polymer10011880.12UniProt (P0DOY7)
Pfam (PF00366)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17AR, CR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
18AS, CS30S ribosomal protein S19polymer799006.52UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
19AT, CT30S ribosomal protein S20polymer9910921.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20AY, CYElongation factor Gpolymer68776510.52UniProt (Q72I01)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)EF-G
21AA, CA16S Ribosomal RNApolymer1511490593.52GenBank (46197919)Thermus thermophilus HB27
22AW, CWtRNApolymer7724728.72GenBank (1151176235)Escherichia coli
23AV, CVmRNApolymer3611747.22Escherichia coli str. K-12
24AX, CXtRNApolymer7824608.72GenBank (1154835240)Escherichia coli
25BC, DC50S ribosomal protein L1polymer22824741.52UniProt (A0A1J1EJ43)
Pfam (PF00687)
In PDB		Thermus thermophilus
26BD, DD50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
27BE, DE50S ribosomal protein L3polymer20522321.02UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
28BF, DF50S ribosomal protein L4polymer20823071.72UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
29BG, DG50S ribosomal protein L5polymer18120930.42UniProt (P41201)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilusTL4,TthL5
30BH, DH50S ribosomal protein L6polymer16718088.02UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
31BJ, DJ50S ribosomal protein l10polymer17014485.82Thermus thermophilus
32BK, DK50S ribosomal protein L11polymer14014754.22UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
33BN, DN50S ribosomal protein L13polymer13915828.82UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
34BO, DO50S ribosomal protein L14polymer12213323.62UniProt (A0A1J1EU54)
Pfam (PF00238)
In PDB		Thermus thermophilus
35BP, DP50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
36BQ, DQ50S ribosomal protein L16polymer14115993.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
37BR, DR50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
38BS, DS50S ribosomal protein L18polymer9910998.92UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
39BT, DT50S ribosomal protein L19polymer13816289.92UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40BU, DU50S ribosomal protein L20polymer11713648.12UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41BV, DV50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
42BW, DW50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
43BX, DX50S ribosomal protein L23polymer9310386.32UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
44BY, DY50S ribosomal protein L24polymer10711696.22UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
45BZ, DZ50S ribosomal protein L25polymer18520879.02UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)General stress protein CTC
46B0, D050S ribosomal protein L27polymer849397.92UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47B1, D150S ribosomal protein L28polymer9310430.42UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48B2, D250S ribosomal protein L29polymer718539.12UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
49B3, D350S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
50B4, D450S ribosomal protein L31polymer353893.62UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
51B5, D550S ribosomal protein L32polymer596590.92UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52B6, D650S ribosomal protein L33polymer506214.42UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
53B7, D750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54B8, D850S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
55B9, D950S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
56Be, De50S ribosomal protein L7/L12polymer10310280.12UniProt (Q72GS2)
Pfam (PF00542)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
57Bf, Bg, Df, Dg50S ribosomal protein L7/L12polymer312656.34Thermus thermophilus
58Bh, Dh50S ribosomal protein L7/L12polymer302571.22Thermus thermophilus
59BA, DA23S Ribosomal RNApolymer2879936302.12GenBank (46197919)Thermus thermophilus HB27
60BB, DB5S Ribosomal RNApolymer11938553.02GenBank (46197919)Thermus thermophilus HB27
61AY, CYGUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
62CY, AYFUSIDIC ACIDnon-polymer516.72Chemie (FUA)
63CA, DA, AA, BANEOMYCINnon-polymer614.66Chemie (NMY)
64CY, BAMAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
AY, CY: 4 - 690 (UniProt: Q72I01)
PDBExternal DatabaseDetails
Thr 40His 40conflict
Lys 129His 129conflict
Asn 226His 226conflict
AX, CX: 1 - 76 (GenBank: 1154835240)
PDBExternal DatabaseDetails
Val 77-expression tag
Ace 78-expression tag
BQ, DQ: 1 - 141 (UniProt: Q72I11)
PDBExternal DatabaseDetails
Tyr 32Phe 32conflict
Be, De: 51 - 122 (UniProt: Q72GS2)
PDBExternal DatabaseDetails
Unk 1-expression tag
Unk 2-expression tag
Unk 3-expression tag
Unk 4-expression tag
Unk 5-expression tag
Unk 6-expression tag
Unk 7-expression tag
Unk 8-expression tag
Unk 9-expression tag
Unk 10-expression tag
Unk 11-expression tag
Unk 12-expression tag
Unk 13-expression tag
Unk 14-expression tag
Unk 15-expression tag
Unk 16-expression tag
Unk 17-expression tag
Unk 18-expression tag
Unk 19-expression tag
Unk 20-expression tag
Unk 21-expression tag
Unk 22-expression tag
Unk 23-expression tag
Unk 24-expression tag
Unk 25-expression tag
Unk 26-expression tag
Unk 27-expression tag
Unk 28-expression tag
Unk 29-expression tag
Unk 30-expression tag
Unk 31-expression tag
BA, DA: 6 - 2897 (GenBank: 46197919)
PDBExternal DatabaseDetails
U 1141C 1535654conflict
U 2825G 1537301conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains122
Total formula weight4625163.2
Non-Polymers*Number of molecules12
Total formula weight5656.3
All*Total formula weight4630819.5
*Water molecules are not included.

224004

PDB entries from 2024-08-21

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