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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V9L

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AB, CB30S ribosomal protein S2polymer23527116.42UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus
2AC, CC30S ribosomal protein S3polymer20722975.62UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
3AD, CD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
4AE, CE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
5AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus
6AG, CG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus
7AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus
8AI, CI30S ribosomal protein S9polymer12714279.42UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus
9AJ, CJ30S ribosomal protein S10polymer9911398.32UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus
10AK, CK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus
11AL, CL30S ribosomal protein S12polymer12513875.42UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus
12AM, CM30S ribosomal protein S13polymer12514207.72UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus
13AN, CN30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus
14AO, CO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus
15AP, CP30S ribosomal protein S16polymer849995.52UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus
16AQ, CQ30S ribosomal protein S17polymer10011880.12UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus
17AR, CR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus
18AS, CS30S ribosomal protein S19polymer799006.52UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus
19AT, CT30S ribosomal protein S20polymer9910921.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus
20AA, CAribosomal RNA 16Spolymer1511490593.52Thermus thermophilus
21AW, CWtransfer RNApolymer7724728.72Escherichia coli
22AV, CVmessenger RNApolymer237553.72Thermus thermophilus
23AY, CYElongation factor Gpolymer68776547.62UniProt (Q72I01)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
UniProt (by SIFTS) (Q5SHN5)
In PDB		Thermus thermophilus
24AU, CUVIOMYCINpolymer6703.72NOR (NOR00633)
BIRD (PRD_000226)		Streptomyces
25BC, DC50S ribosomal protein L1polymer22824741.52UniProt (Q72GV9)
Pfam (PF00687)
In PDB		Thermus thermophilus
26BD, DD50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
27BE, DE50S ribosomal protein L3polymer20522321.02UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus
28BF, DF50S ribosomal protein L4polymer20823071.72UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus
29BG, DG50S ribosomal protein L5polymer18120930.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)
In PDB		Thermus thermophilus
30BH, DH50S ribosomal protein L6polymer16718088.02UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus
31BJ, DJ50S RIBOSOMAL PROTEIN L10polymer17014485.82Thermus thermophilus
32BK, DK50S ribosomal protein L11polymer14014754.22UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
33BN, DN50S ribosomal protein L13polymer13815699.72UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus
34BO, DO50S ribosomal protein L14polymer12213323.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus
35BP, DP50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus
36BQ, DQ50S ribosomal protein L16polymer14115993.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus
37BR, DR50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus
38BS, DS50S ribosomal protein L18polymer9910998.92UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus
39BT, DT50S ribosomal protein L19polymer13816289.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus
40BU, DU50S ribosomal protein L20polymer11713648.12UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus
41BV, DV50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus
42BW, DW50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus
43BX, DX50S ribosomal protein L23polymer9310386.32UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus
44BY, DY50S ribosomal protein L24polymer10711696.22UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
45BZ, DZ50S ribosomal protein L25polymer18520879.02UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
46B0, D050S ribosomal protein L27polymer849397.92UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus
47B2, D250S ribosomal protein L29polymer718539.12UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus
48B3, D350S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus
49B5, D550S ribosomal protein L32polymer596590.92UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus
50B6, D650S ribosomal protein L33polymer506214.42UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus
51B7, D750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
52B8, D850S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus
53B9, D950S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus
54Be, De50S ribosomal protein L7/L12polymer10210195.02UniProt (Q72GS2)
Pfam (PF00542)
In PDB		Thermus thermophilus
55Bf, Bg, Df, Dg50S RIBOSOMAL PROTEIN L7/L12polymer312656.34Thermus thermophilus
56Bh, Dh50S RIBOSOMAL PROTEIN L7/L12polymer302571.22Thermus thermophilus
57B1, D150S ribosomal protein L28polymer9310430.42UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus
58B4, D450S ribosomal protein L31polymer353893.62UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus
59BA, DA23S ribosomal RNApolymer2879936302.12Thermus thermophilus
60BB, DB5S ribosomal RNApolymer11938553.02Thermus thermophilus
61AY, CYFUSIDIC ACIDnon-polymer516.72Chemie (FUA)
62AY, CYGUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
63BA, CYMAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
AI, CI: 2 - 128 (UniProt: P62669)
PDBExternal DatabaseDetails
His 58Arg 58conflict
AQ, CQ: 2 - 101 (UniProt: P62658)
PDBExternal DatabaseDetails
Glu 96Gln 96conflict
AT, CT: 8 - 106 (UniProt: P62661)
PDBExternal DatabaseDetails
Ile 41Val 41conflict
AY, CY: 4 - 690 (UniProt: Q72I01)
PDBExternal DatabaseDetails
Lys 129His 129conflict
Asn 226His 226conflict
BC, DC: 2 - 229 (UniProt: Q72GV9)
PDBExternal DatabaseDetails
Val 20Ile 20conflict
Arg 28His 28conflict
BF, DF: 1 - 208 (UniProt: Q72I05)
PDBExternal DatabaseDetails
Lys 2-insertion
Glu 3-insertion
Val 4-insertion
Ala 5-insertion
Val 6-insertion
BG, DG: 2 - 182 (UniProt: Q72I16)
PDBExternal DatabaseDetails
Val 5Leu 5conflict
BO, DO: 1 - 122 (UniProt: Q72I14)
PDBExternal DatabaseDetails
Ile 69Val 69conflict
BQ, DQ: 1 - 141 (UniProt: Q72I11)
PDBExternal DatabaseDetails
Tyr 32Phe 32conflict
BT, DT: 1 - 138 (UniProt: Q72JU9)
PDBExternal DatabaseDetails
Gln 123Lys 123conflict
Ala 135Val 135conflict
B0, D0: 2 - 85 (UniProt: Q72HR3)
PDBExternal DatabaseDetails
Arg 11Lys 11conflict
B5, D5: 2 - 60 (UniProt: P62652)
PDBExternal DatabaseDetails
Thr 29Ile 29conflict
Be, De: 51 - 122 (UniProt: Q72GS2)
B1, D1: 3 - 95 (UniProt: Q72G84)
PDBExternal DatabaseDetails
Lys 81Arg 81conflict
Be, De: 1 - 30 (PDB: 4V9L)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains122
Total formula weight4568611.7
Non-Polymers*Number of molecules6
Total formula weight1968.4
All*Total formula weight4570580.2
*Water molecules are not included.

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PDB entries from 2024-04-17

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