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4V9J

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AB, CB30S ribosomal protein S2polymer23527116.42UniProt (P62662)
Pfam (PF00318)
In PDB
Thermus thermophilus
2AC, CC30S ribosomal protein S3polymer20722975.62UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Thermus thermophilus
3AD, CD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Thermus thermophilus
4AE, CE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Thermus thermophilus
5AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB
Thermus thermophilusTS9
6AG, CG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB
Thermus thermophilus
7AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB
Thermus thermophilus
8AI, CI30S ribosomal protein S9polymer12714298.52UniProt (P62669)
Pfam (PF00380)
In PDB
Thermus thermophilus
9AJ, CJ30S ribosomal protein S10polymer9911398.32UniProt (P62653)
Pfam (PF00338)
In PDB
Thermus thermophilus
10AK, CK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB
Thermus thermophilus
11AL, CL30S ribosomal protein S12polymer12513875.42UniProt (P61941)
Pfam (PF00164)
In PDB
Thermus thermophilus
12AM, CM30S ribosomal protein S13polymer12514207.72UniProt (P62655)
Pfam (PF00416)
In PDB
Thermus thermophilus
13AN, CN30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB
Thermus thermophilus
14AO, CO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB
Thermus thermophilus
15AP, CP30S ribosomal protein S16polymer849995.52UniProt (P62238)
Pfam (PF00886)
In PDB
Thermus thermophilus
16AQ, CQ30S ribosomal protein S17polymer10011879.12UniProt (P62658)
Pfam (PF00366)
In PDB
Thermus thermophilus
17AR, CR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB
Thermus thermophilus
18AS, CS30S ribosomal protein S19polymer799006.52UniProt (P62660)
Pfam (PF00203)
In PDB
Thermus thermophilus
19AT, CT30S ribosomal protein S20polymer9910907.12UniProt (P62661)
Pfam (PF01649)
In PDB
Thermus thermophilus
20AA, CA16S ribosomal RNApolymer1511490593.52Thermus thermophilus
21AV, CVmessenger RNApolymer185907.62Thermus thermophilus
22AW, CWtRNA-Metpolymer7724728.72Escherichia coli
23AY, CYElongation factor Gpolymer68776547.62UniProt (Q72I01)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
UniProt (by SIFTS) (Q5SHN5)
In PDB
Thermus thermophilusEF-G
24AU, CUViomycinpolymer6703.72NOR (NOR00633)
BIRD (PRD_000226)
Streptomyces
25BC, DC50S ribosomal protein L1polymer22824741.52UniProt (Q72GV9)
Pfam (PF00687)
In PDB
Thermus thermophilus
26BD, DD50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Thermus thermophilus
27BE, DE50S ribosomal protein L3polymer20522321.02UniProt (Q72I04)
Pfam (PF00297)
In PDB
Thermus thermophilus
28BF, DF50S ribosomal protein L4polymer20823071.72UniProt (Q72I05)
Pfam (PF00573)
In PDB
Thermus thermophilusL1e
29BG, DG50S ribosomal protein L5polymer18120930.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)
In PDB
Thermus thermophilus
30BH, DH50S ribosomal protein L6polymer16718088.02UniProt (Q72I19)
Pfam (PF00347)
In PDB
Thermus thermophilus
31BJ, DJ50S ribosomal protein L10polymer17014485.82Thermus thermophilus
32BK, DK50S ribosomal protein L11polymer14014754.22UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Thermus thermophilus
33BO, DO50S ribosomal protein L14polymer12213323.62UniProt (Q72I14)
Pfam (PF00238)
In PDB
Thermus thermophilus
34BP, DP50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)
In PDB
Thermus thermophilus
35BQ, DQ50S ribosomal protein L16polymer14115993.92UniProt (Q72I11)
Pfam (PF00252)
In PDB
Thermus thermophilus
36BR, DR50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB
Thermus thermophilus
37BS, DS50S ribosomal protein L18polymer9910998.92UniProt (Q72I20)
Pfam (PF00861)
In PDB
Thermus thermophilusTL24
38BT, DT50S ribosomal protein L19polymer13816289.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB
Thermus thermophilus
39BU, DU50S ribosomal protein L20polymer11713648.12UniProt (Q72L76)
Pfam (PF00453)
In PDB
Thermus thermophilus
40BV, DV50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB
Thermus thermophilus
41BW, DW50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB
Thermus thermophilus
42BX, DX50S ribosomal protein L23polymer9310386.32UniProt (Q72I06)
Pfam (PF00276)
In PDB
Thermus thermophilus
43BY, DY50S ribosomal protein L24polymer10711696.22UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Thermus thermophilus
44BZ, DZ50S ribosomal protein L25polymer18520879.02UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB
Thermus thermophilusTL5
45B0, D050S ribosomal protein L27polymer849397.92UniProt (Q72HR3)
Pfam (PF01016)
In PDB
Thermus thermophilus
46B1, D150S ribosomal protein L28polymer9310430.42UniProt (Q72G84)
Pfam (PF00830)
In PDB
Thermus thermophilus
47B4, D450S ribosomal protein L31polymer353893.62UniProt (Q72JR0)
Pfam (PF01197)
In PDB
Thermus thermophilus
48BN, DN50S ribosomal protein L13polymer13815699.72UniProt (Q72IN1)
Pfam (PF00572)
In PDB
Thermus thermophilus
49B2, D250S ribosomal protein L29polymer718539.12UniProt (Q72I12)
Pfam (PF00831)
In PDB
Thermus thermophilus
50B3, D350S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB
Thermus thermophilus
51B5, D550S ribosomal protein L32polymer596590.92UniProt (P62652)
Pfam (PF01783)
In PDB
Thermus thermophilus
52B6, D650S ribosomal protein L33polymer506214.42UniProt (Q72GW3)
Pfam (PF00471)
In PDB
Thermus thermophilus
53B7, D750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB
Thermus thermophilus
54B8, D850S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)
In PDB
Thermus thermophilus
55B9, D950S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB
Thermus thermophilusRibosomal protein B
56Be, De50S ribosomal protein L7/L12polymer10310280.12UniProt (Q72GS2)
Pfam (PF00542)
In PDB
Thermus thermophilus
57Bf, Bg, Df, Dg50S ribosomal protein L7/L12polymer312656.34Thermus thermophilus
58Bh, Dh50S ribosomal protein L7/L12polymer302571.22Thermus thermophilus
59BB, DB5S ribosomal RNApolymer11938553.02Thermus thermophilus
60BA, DA23S ribosomal RNApolymer2879936302.12Thermus thermophilus
61AY, CYPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.22Chemie (GNP)
62AY, CYMAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
AY, CY: 4 - 690 (UniProt: Q72I01)
PDBExternal DatabaseDetails
Lys 129His 129conflict
Asn 226His 226conflict
BC, DC: 2 - 229 (UniProt: Q72GV9)
PDBExternal DatabaseDetails
Val 20Ile 20conflict
Arg 28His 28conflict
BF, DF: 1 - 208 (UniProt: Q72I05)
PDBExternal DatabaseDetails
Lys 2-insertion
Glu 3-insertion
Val 4-insertion
Ala 5-insertion
Val 6-insertion
BG, DG: 2 - 182 (UniProt: Q72I16)
PDBExternal DatabaseDetails
Val 5Leu 5conflict
BO, DO: 1 - 122 (UniProt: Q72I14)
PDBExternal DatabaseDetails
Ile 69Val 69conflict
BQ, DQ: 1 - 141 (UniProt: Q72I11)
PDBExternal DatabaseDetails
Tyr 32Phe 32conflict
BT, DT: 1 - 138 (UniProt: Q72JU9)
PDBExternal DatabaseDetails
Gln 123Lys 123conflict
Ala 135Val 135conflict
B0, D0: 2 - 85 (UniProt: Q72HR3)
PDBExternal DatabaseDetails
Arg 11Lys 11conflict
B1, D1: 3 - 95 (UniProt: Q72G84)
PDBExternal DatabaseDetails
Lys 81Arg 81conflict
B5, D5: 2 - 60 (UniProt: P62652)
PDBExternal DatabaseDetails
Thr 29Ile 29conflict
Be, De: 51 - 122 (UniProt: Q72GS2)
Be, De: 1 - 50 (PDB: 4V9J)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains122
Total formula weight4565498.0
Non-Polymers*Number of molecules4
Total formula weight1093.0
All*Total formula weight4566591.0
*Water molecules are not included.

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PDB entries from 2024-07-24

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