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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V9J

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, JB
(AB, CB)		30S ribosomal protein S2polymer23527116.42UniProt (P62662)
Pfam (PF00318)		Thermus thermophilus
2B, KB
(AC, CC)		30S ribosomal protein S3polymer20722975.62UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus
3C, LB
(AD, CD)		30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus
4D, MB
(AE, CE)		30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus
5E, NB
(AF, CF)		30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)		Thermus thermophilusTS9
6F, OB
(AG, CG)		30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)		Thermus thermophilus
7G, PB
(AH, CH)		30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)		Thermus thermophilus
8H, QB
(AI, CI)		30S ribosomal protein S9polymer12714298.52UniProt (P62669)
Pfam (PF00380)		Thermus thermophilus
9I, RB
(AJ, CJ)		30S ribosomal protein S10polymer9911398.32UniProt (P62653)
Pfam (PF00338)		Thermus thermophilus
10J, SB
(AK, CK)		30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)		Thermus thermophilus
11K, TB
(AL, CL)		30S ribosomal protein S12polymer12513875.42UniProt (P61941)
Pfam (PF00164)		Thermus thermophilus
12L, UB
(AM, CM)		30S ribosomal protein S13polymer12514207.72UniProt (P62655)
Pfam (PF00416)		Thermus thermophilus
13M, VB
(AN, CN)		30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)		Thermus thermophilus
14N, WB
(AO, CO)		30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)		Thermus thermophilus
15O, XB
(AP, CP)		30S ribosomal protein S16polymer849995.52UniProt (P62238)
Pfam (PF00886)		Thermus thermophilus
16P, YB
(AQ, CQ)		30S ribosomal protein S17polymer10011879.12UniProt (P62658)
Pfam (PF00366)		Thermus thermophilus
17Q, ZB
(AR, CR)		30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)		Thermus thermophilus
18AC, R
(AS, CS)		30S ribosomal protein S19polymer799006.52UniProt (P62660)
Pfam (PF00203)		Thermus thermophilus
19BC, S
(AT, CT)		30S ribosomal protein S20polymer9910907.12UniProt (P62661)
Pfam (PF01649)		Thermus thermophilus
20CC, T
(AA, CA)		16S ribosomal RNApolymer1511490593.52Thermus thermophilus
21DC, U
(AV, CV)		messenger RNApolymer185907.62Thermus thermophilus
22EC, V
(AW, CW)		tRNA-Metpolymer7724728.72Escherichia coli
23FC, W
(AY, CY)		Elongation factor Gpolymer68776547.62UniProt (Q72I01)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
UniProt (by SIFTS) (Q5SHN5)		Thermus thermophilusEF-G
24GC, X
(AU, CU)		Viomycinpolymer6703.72NOR (NOR00633)
BIRD (PRD_000226)		Streptomyces
25HC, Y
(BC, DC)		50S ribosomal protein L1polymer22824741.52UniProt (Q72GV9)
Pfam (PF00687)		Thermus thermophilus
26IC, Z
(BD, DD)		50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)		Thermus thermophilus
27AA, JC
(BE, DE)		50S ribosomal protein L3polymer20522321.02UniProt (Q72I04)
Pfam (PF00297)		Thermus thermophilus
28BA, KC
(BF, DF)		50S ribosomal protein L4polymer20823071.72UniProt (Q72I05)
Pfam (PF00573)		Thermus thermophilusL1e
29CA, LC
(BG, DG)		50S ribosomal protein L5polymer18120930.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)		Thermus thermophilus
30DA, MC
(BH, DH)		50S ribosomal protein L6polymer16718088.02UniProt (Q72I19)
Pfam (PF00347)		Thermus thermophilus
31EA, NC
(BJ, DJ)		50S ribosomal protein L10polymer17014485.82Thermus thermophilus
32FA, OC
(BK, DK)		50S ribosomal protein L11polymer14014754.22UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)		Thermus thermophilus
33GA, PC
(BO, DO)		50S ribosomal protein L14polymer12213323.62UniProt (Q72I14)
Pfam (PF00238)		Thermus thermophilus
34HA, QC
(BP, DP)		50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)		Thermus thermophilus
35IA, RC
(BQ, DQ)		50S ribosomal protein L16polymer14115993.92UniProt (Q72I11)
Pfam (PF00252)		Thermus thermophilus
36JA, SC
(BR, DR)		50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)		Thermus thermophilus
37KA, TC
(BS, DS)		50S ribosomal protein L18polymer9910998.92UniProt (Q72I20)
Pfam (PF00861)		Thermus thermophilusTL24
38LA, UC
(BT, DT)		50S ribosomal protein L19polymer13816289.92UniProt (Q72JU9)
Pfam (PF01245)		Thermus thermophilus
39MA, VC
(BU, DU)		50S ribosomal protein L20polymer11713648.12UniProt (Q72L76)
Pfam (PF00453)		Thermus thermophilus
40NA, WC
(BV, DV)		50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)		Thermus thermophilus
41OA, XC
(BW, DW)		50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)		Thermus thermophilus
42PA, YC
(BX, DX)		50S ribosomal protein L23polymer9310386.32UniProt (Q72I06)
Pfam (PF00276)		Thermus thermophilus
43QA, ZC
(BY, DY)		50S ribosomal protein L24polymer10711696.22UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)		Thermus thermophilus
44AD, RA
(BZ, DZ)		50S ribosomal protein L25polymer18520879.02UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)		Thermus thermophilusTL5
45BD, SA
(B0, D0)		50S ribosomal protein L27polymer849397.92UniProt (Q72HR3)
Pfam (PF01016)		Thermus thermophilus
46CD, TA
(B1, D1)		50S ribosomal protein L28polymer9310430.42UniProt (Q72G84)
Pfam (PF00830)		Thermus thermophilus
47DD, UA
(B4, D4)		50S ribosomal protein L31polymer353893.62UniProt (Q72JR0)
Pfam (PF01197)		Thermus thermophilus
48ED, VA
(BN, DN)		50S ribosomal protein L13polymer13815699.72UniProt (Q72IN1)
Pfam (PF00572)		Thermus thermophilus
49FD, WA
(B2, D2)		50S ribosomal protein L29polymer718539.12UniProt (Q72I12)
Pfam (PF00831)		Thermus thermophilus
50GD, XA
(B3, D3)		50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)		Thermus thermophilus
51HD, YA
(B5, D5)		50S ribosomal protein L32polymer596590.92UniProt (P62652)
Pfam (PF01783)		Thermus thermophilus
52ID, ZA
(B6, D6)		50S ribosomal protein L33polymer506214.42UniProt (Q72GW3)
Pfam (PF00471)		Thermus thermophilus
53AB, JD
(B7, D7)		50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)		Thermus thermophilus
54BB, KD
(B8, D8)		50S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)		Thermus thermophilus
55CB, LD
(B9, D9)		50S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)		Thermus thermophilusRibosomal protein B
56DB, MD
(Be, De)		50S ribosomal protein L7/L12polymer10310280.12UniProt (Q72GS2)
Pfam (PF00542)		Thermus thermophilus
57EB, FB, ND, OD
(Bf, Bg, Df, Dg)		50S ribosomal protein L7/L12polymer312656.34Thermus thermophilus
58GB, PD
(Bh, Dh)		50S ribosomal protein L7/L12polymer302571.22Thermus thermophilus
59HB, QD
(BB, DB)		5S ribosomal RNApolymer11938553.02Thermus thermophilus
60IB, RD
(BA, DA)		23S ribosomal RNApolymer2879936302.12Thermus thermophilus
61SD, VD
(AY, CY)		PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.22Chemie (GNP)
62TD, UD
(AY, CY)		MAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
AY, CY: 4 - 690 (UniProt: Q72I01)
PDBExternal DatabaseDetails
Lys 129His 129conflict
Asn 226His 226conflict
BC, DC: 2 - 229 (UniProt: Q72GV9)
PDBExternal DatabaseDetails
Val 20Ile 20conflict
Arg 28His 28conflict
BF, DF: 1 - 208 (UniProt: Q72I05)
PDBExternal DatabaseDetails
Lys 2-insertion
Glu 3-insertion
Val 4-insertion
Ala 5-insertion
Val 6-insertion
BG, DG: 2 - 182 (UniProt: Q72I16)
PDBExternal DatabaseDetails
Val 5Leu 5conflict
BO, DO: 1 - 122 (UniProt: Q72I14)
PDBExternal DatabaseDetails
Ile 69Val 69conflict
BQ, DQ: 1 - 141 (UniProt: Q72I11)
PDBExternal DatabaseDetails
Tyr 32Phe 32conflict
BT, DT: 1 - 138 (UniProt: Q72JU9)
PDBExternal DatabaseDetails
Gln 123Lys 123conflict
Ala 135Val 135conflict
B0, D0: 2 - 85 (UniProt: Q72HR3)
PDBExternal DatabaseDetails
Arg 11Lys 11conflict
B1, D1: 3 - 95 (UniProt: Q72G84)
PDBExternal DatabaseDetails
Lys 81Arg 81conflict
B5, D5: 2 - 60 (UniProt: P62652)
PDBExternal DatabaseDetails
Thr 29Ile 29conflict
Be, De: 51 - 122 (UniProt: Q72GS2)
Be, De: 1 - 50 (PDB: 4V9J)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains122
Total formula weight4565498.0
Non-Polymers*Number of molecules4
Total formula weight1093.0
All*Total formula weight4566591.0
*Water molecules are not included.

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PDB entries from 2025-06-25

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