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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V9H

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S ribosomal RNApolymer1516492082.31GenBank (55771382)Thermus thermophilus
2AVPE hybrid state tRNA Phepolymer7624485.51GenBank (169887498)Escherichia coli
3AXmRNApolymer258157.01Synthetic construct
4AJ30S ribosomal protein S10polymer9811299.21UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
5AK30S ribosomal protein S11polymer11912606.41UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
6AL30S ribosomal protein S12polymer12413804.31UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
7AM30S ribosomal protein S13polymer12414078.51UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
8AN30S ribosomal protein S14 TYPE Zpolymer607027.51UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
9AO30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
10AP30S ribosomal protein S16polymer839924.51UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
11AQ30S ribosomal protein S17polymer9911722.91UniProt (Q5SHP7)
In PDB		Thermus thermophilus
12AR30S ribosomal protein S18polymer708155.81UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
13AS30S ribosomal protein S19polymer788949.41UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
14AT30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
15AB30S ribosomal protein S2polymer23426987.31UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
16AC30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
17AD30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
18AE30S ribosomal protein S5polymer15016331.11UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
19AF30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
20AG30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
21AH30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
22AI30S ribosomal protein S9polymer12714298.51UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
23AYElongation factor Gpolymer68075741.71UniProt (Q5SHN5)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB		Thermus thermophilus
24AU30S ribosomal protein THXpolymer242960.51UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
25BA23S ribosomal RNApolymer2915947935.41GenBank (55771382)Thermus thermophilus
26BB5S ribosomal RNApolymer12239540.61GenBank (55771382)Thermus thermophilus
27BN50S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
28BO50S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
29BP50S ribosomal protein L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
30BQ50S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
31BR50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
32BS50S ribosomal protein L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilusTL24
33BT50S ribosomal protein L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
34BU50S ribosomal protein L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
35BV50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
36BW50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
37BX50S ribosomal protein L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
38BY50S ribosomal protein L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
39BZ50S ribosomal protein L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
40B050S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
41B150S ribosomal protein L28polymer9811004.21UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
42B250S ribosomal protein L29polymer728670.31UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
43BD50S ribosomal protein L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
44B350S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
45B450S ribosomal protein L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
46B550S ribosomal protein L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
47B650S ribosomal protein L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
48B750S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
49B850S ribosomal protein L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
50B950S ribosomal protein L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilusRibosomal protein B
51BC50S ribosomal protein L1polymer22924872.71UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
52BE50S ribosomal protein L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
53BF50S ribosomal protein L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
54BG50S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
55BH50S ribosomal protein L6polymer18019568.91UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
56BK50S ribosomal protein L11polymer14715526.11UniProt (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
57BJ50S ribosomal protein L10polymer1309258.11Thermus thermophilus
58BL50S ribosomal protein L12 CTDpolymer12510656.11Thermus thermophilus
59AA, BA, BD, B8, BE...MAGNESIUM IONnon-polymer24.3138Chemie (MG)
60AYPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
61waterwater18.04Chemie (HOH)
Sequence modifications
AI: 2 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58CONFLICT
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2302152.7
Non-Polymers*Number of molecules139
Total formula weight3875.3
All*Total formula weight2306028.0
*Water molecules are not included.

218853

数据于2024-04-24公开中

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