4V9D

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

This is a non-PDB format compatible entry.

Replaces:  3R8NReplaces:  3R8O

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, Y (AA, BA)	16S rRNA	polymer	1539	498725.4	2	GenBank (J01695.2)	Escherichia coli
2	B, Z (AB, BB)	30S ribosomal protein S2	polymer	218	24253.9	2	UniProt (P0A7V0) Pfam (PF00318)	Escherichia coli
3	AA, C (AC, BC)	30S ribosomal protein S3	polymer	206	23078.8	2	UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189)	Escherichia coli
4	BA, D (AD, BD)	30S ribosomal protein S4	polymer	205	23383.0	2	UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479)	Escherichia coli
5	CA, E (AE, BE)	30S ribosomal protein S5	polymer	150	15804.3	2	UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719)	Escherichia coli
6	DA, F (AF, BF)	30S ribosomal protein S6	polymer	100	11669.4	2	UniProt (P02358) Pfam (PF01250)	Escherichia coli
7	EA, G (AG, BG)	30S ribosomal protein S7	polymer	151	16861.5	2	UniProt (P02359) Pfam (PF00177)	Escherichia coli
8	FA, H (AH, BH)	30S ribosomal protein S8	polymer	129	14015.4	2	UniProt (P0A7W7) Pfam (PF00410)	Escherichia coli
9	GA, I (AI, BI)	30S ribosomal protein S9	polymer	127	14554.9	2	UniProt (P0A7X3) Pfam (PF00380)	Escherichia coli
10	HA, J (AJ, BJ)	30S ribosomal protein S10	polymer	98	11197.0	2	UniProt (P0A7R5) Pfam (PF00338)	Escherichia coli
11	IA, K (AK, BK)	30S ribosomal protein S11	polymer	117	12487.2	2	UniProt (P0A7R9) Pfam (PF00411)	Escherichia coli
12	JA, L (AL, BL)	30S ribosomal protein S12	polymer	123	13637.0	2	UniProt (P0A7S3) Pfam (PF00164)	Escherichia coli
13	KA, M (AM, BM)	30S ribosomal protein S13	polymer	114	12625.8	2	UniProt (P0A7S9) Pfam (PF00416)	Escherichia coli
14	LA, N (AN, BN)	30S ribosomal protein S14	polymer	100	11475.4	2	UniProt (P0AG59) Pfam (PF00253)	Escherichia coli
15	MA, O (AO, BO)	30S ribosomal protein S15	polymer	88	10159.6	2	UniProt (P0ADZ4) Pfam (PF00312)	Escherichia coli
16	NA, P (AP, BP)	30S ribosomal protein S16	polymer	82	9207.6	2	UniProt (P0A7T3) Pfam (PF00886)	Escherichia coli
17	OA, Q (AQ, BQ)	30S ribosomal protein S17	polymer	80	9263.9	2	UniProt (P0AG63) Pfam (PF00366)	Escherichia coli
18	PA, R (AR, BR)	30S ribosomal protein S18	polymer	55	6466.5	2	UniProt (P0A7T7) Pfam (PF01084)	Escherichia coli
19	QA, S (AS, BS)	30S ribosomal protein S19	polymer	79	9057.6	2	UniProt (P0A7U3) Pfam (PF00203)	Escherichia coli
20	RA, T (AT, BT)	30S ribosomal protein S20	polymer	85	9506.2	2	UniProt (P0A7U7) Pfam (PF01649)	Escherichia coli
21	SA, U (AU, BU)	30S ribosomal protein S21	polymer	51	6067.1	2	UniProt (P68679) Pfam (PF01165)	Escherichia coli
22	TA, V (AV, BV)	phenylalanine specific transfer RNA	polymer	76	24485.5	2	GenBank (AP009048.1)	Escherichia coli
23	UA, W (AX, BX)	messenger RNA	polymer	16	5170.2	2
24	X (AY)	ribosome recycling factor	polymer	183	20322.2	1	UniProt (P0A805) Pfam (PF01765)	Escherichia coli
25	AC, VA (CA, DA)	23S rRNA	polymer	2903	941306.2	2	GenBank (33357927)	Escherichia coli
26	WA (CB)	5S rRNA	polymer	119	38483.9	1	GenBank (CP000948.1)	Escherichia coli
27	CC, XA (CC, DC)	50S ribosomal protein L2	polymer	271	29663.2	2	UniProt (P60422) Pfam (PF00181) Pfam (PF03947)	Escherichia coli
28	DC, YA (CD, DD)	50S ribosomal protein L3	polymer	209	22277.5	2	UniProt (P60438) Pfam (PF00297)	Escherichia coli
29	EC, ZA (CE, DE)	50S ribosomal protein L4	polymer	201	22121.6	2	UniProt (P60723) Pfam (PF00573)	Escherichia coli
30	AB, FC (CF, DF)	50S ribosomal protein L5	polymer	177	20073.2	2	UniProt (P62399) Pfam (PF00281) Pfam (PF00673)	Escherichia coli
31	BB, GC (CG, DG)	50S ribosomal protein L6	polymer	176	18801.6	2	UniProt (P0AG55) Pfam (PF00347)	Escherichia coli
32	CB, HC (CH, DH)	50S ribosomal protein L9	polymer	149	15789.0	2	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948)	Escherichia coli
33	DB, IC (CI, DI)	50S ribosomal protein L11	polymer	141	14763.2	2	UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298)	Escherichia coli
34	EB, JC (CJ, DJ)	50S ribosomal protein L13	polymer	142	16050.6	2	UniProt (P0AA10) Pfam (PF00572)	Escherichia coli
35	FB, KC (CK, DK)	50S ribosomal protein L14	polymer	122	13451.9	2	UniProt (P0ADY3) Pfam (PF00238)	Escherichia coli
36	GB, LC (CL, DL)	50S ribosomal protein L15	polymer	143	14877.3	2	UniProt (P02413) Pfam (PF00828)	Escherichia coli
37	HB, MC (CM, DM)	50S ribosomal protein L16	polymer	136	15312.3	2	UniProt (P0ADY7) Pfam (PF00252)	Escherichia coli
38	IB, NC (CN, DN)	50S ribosomal protein L17	polymer	120	13721.9	2	UniProt (P0AG44) Pfam (PF01196)	Escherichia coli
39	JB, OC (CO, DO)	50S ribosomal protein L18	polymer	116	12663.5	2	UniProt (P0C018) Pfam (PF00861)	Escherichia coli
40	KB, PC (CP, DP)	50S ribosomal protein L19	polymer	114	13028.1	2	UniProt (P0A7K6) Pfam (PF01245)	Escherichia coli
41	LB, QC (CQ, DQ)	50S ribosomal protein L20	polymer	117	13396.8	2	UniProt (P0A7L3) Pfam (PF00453)	Escherichia coli
42	MB, RC (CR, DR)	50S ribosomal protein L21	polymer	103	11586.4	2	UniProt (P0AG48) Pfam (PF00829)	Escherichia coli
43	NB, SC (CS, DS)	50S ribosomal protein L22	polymer	110	12253.4	2	UniProt (P61175) Pfam (PF00237)	Escherichia coli
44	OB, TC (CT, DT)	50S ribosomal protein L23	polymer	93	10546.5	2	UniProt (P0ADZ0) Pfam (PF00276)	Escherichia coli
45	PB, UC (CU, DU)	50S ribosomal protein L24	polymer	102	11078.9	2	UniProt (P60624) Pfam (PF00467) Pfam (PF17136)	Escherichia coli
46	QB, VC (CV, DV)	50S ribosomal protein L25	polymer	94	10713.5	2	UniProt (P68919) Pfam (PF01386)	Escherichia coli
47	RB (CW)	50S ribosomal protein L27	polymer	76	8275.5	1	UniProt (P0A7L8) Pfam (PF01016)	Escherichia coli
48	SB, XC (CX, DX)	50S ribosomal protein L28	polymer	77	8896.4	2	UniProt (P0A7M2) Pfam (PF00830)	Escherichia coli
49	TB, YC (CY, DY)	50S ribosomal protein L29	polymer	63	7286.5	2	UniProt (P0A7M6) Pfam (PF00831)	Escherichia coli
50	UB, ZC (CZ, DZ)	50S ribosomal protein L30	polymer	58	6423.6	2	UniProt (P0AG51) Pfam (PF00327)	Escherichia coli
51	AD, VB (C0, D0)	50S ribosomal protein L32	polymer	56	6332.2	2	UniProt (P0A7N4) Pfam (PF01783)	Escherichia coli
52	BD, WB (C1, D1)	50S ribosomal protein L33	polymer	50	5814.8	2	UniProt (P0A7N9) Pfam (PF00471)	Escherichia coli
53	CD, XB (C2, D2)	50S ribosomal protein L34	polymer	46	5397.5	2	UniProt (P0A7P5) Pfam (PF00468)	Escherichia coli
54	DD, YB (C3, D3)	50S ribosomal protein L35	polymer	64	7181.8	2	UniProt (P0A7Q1) Pfam (PF01632)	Escherichia coli
55	ED, ZB (C4, D4)	50S ribosomal protein L36	polymer	38	4377.4	2	UniProt (P0A7Q6) Pfam (PF00444)	Escherichia coli
56	BC (DB)	5S rRNA	polymer	118	38177.8	1	GenBank (CP000948.1)	Escherichia coli
57	WC (DW)	50S ribosomal protein L27	polymer	75	8174.4	1	UniProt (P0A7L8) Pfam (PF01016)	Escherichia coli
58	AE, AF, AG, AH, AI... (AA, BA, CA, DA, DB...)	MAGNESIUM ION	non-polymer		24.3	498	Chemie (MG)
59	KW, UP (D4, C4)	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
60	AX, BX, CX, DX, EX... (CJ, CL, CN, CS, CV...)	water	water		18.0	1727	Chemie (HOH)

Sequence modifications

AY: 3 - 184 (UniProt: P0A805)

PDB	External Database	Details
Gly 2	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	109
	Total formula weight	4310113.2
Non-Polymers*	Number of molecules	500
	Total formula weight	12234.7
All*	Total formula weight	4322347.9

*Water molecules are not included.