4V8U
Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, FB (AA, CA) | 16S RIBOSOMAL RNA | polymer | 1522 | 493958.3 | 2 | GenBank (55771382) | THERMUS THERMOPHILUS HB8 | |
| 2 | B, GB (AB, CB) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) | THERMUS THERMOPHILUS HB8 | |
| 3 | C, HB (AC, CC) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | THERMUS THERMOPHILUS HB8 | |
| 4 | D, IB (AD, CD) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | THERMUS THERMOPHILUS HB8 | |
| 5 | E, JB (AE, CE) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | THERMUS THERMOPHILUS HB8 | |
| 6 | F, KB (AF, CF) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) | THERMUS THERMOPHILUS HB8 | TS9 |
| 7 | G, LB (AG, CG) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) | THERMUS THERMOPHILUS HB8 | |
| 8 | H, MB (AH, CH) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 2 | UniProt (Q5SHQ2) | THERMUS THERMOPHILUS HB8 | |
| 9 | I, NB (AI, CI) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) | THERMUS THERMOPHILUS HB8 | |
| 10 | J, OB (AJ, CJ) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) | THERMUS THERMOPHILUS HB8 | |
| 11 | K, PB (AK, CK) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) | THERMUS THERMOPHILUS HB8 | |
| 12 | L, QB (AL, CL) | 30S RIBOSOMAL PROTEIN S12 | polymer | 132 | 14637.4 | 2 | UniProt (Q5SHN3) Pfam (PF00164) | THERMUS THERMOPHILUS HB8 | |
| 13 | M, RB (AM, CM) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) | THERMUS THERMOPHILUS HB8 | |
| 14 | N, SB (AN, CN) | 30S RIBOSOMAL PROTEIN S14 TYPE Z | polymer | 61 | 7158.7 | 2 | UniProt (Q5SHQ1) | THERMUS THERMOPHILUS HB8 | |
| 15 | O, TB (AO, CO) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) | THERMUS THERMOPHILUS HB8 | |
| 16 | P, UB (AP, CP) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) | THERMUS THERMOPHILUS HB8 | |
| 17 | Q, VB (AQ, CQ) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12325.7 | 2 | UniProt (Q5SHP7) | THERMUS THERMOPHILUS HB8 | |
| 18 | R, WB (AR, CR) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10258.3 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) | THERMUS THERMOPHILUS HB8 | |
| 19 | S, XB (AS, CS) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) | THERMUS THERMOPHILUS HB8 | |
| 20 | T, YB (AT, CT) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) | THERMUS THERMOPHILUS HB8 | |
| 21 | U, ZB (AU, CU) | 30S RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) | THERMUS THERMOPHILUS HB8 | S31 |
| 22 | AC, V (AV, CV) | MRNA | polymer | 76 | 24485.5 | 2 | THERMUS THERMOPHILUS HB8 | ||
| 23 | BC, W (AW, CW) | RNA | polymer | 77 | 24816.8 | 2 | THERMUS THERMOPHILUS HB8 | ||
| 24 | CC, X (AX, CX) | RNA | polymer | 25 | 8157.0 | 2 | THERMUS THERMOPHILUS HB8 | ||
| 25 | DC, Y (AY, CY) | ELONGATION FACTOR G | polymer | 691 | 76977.1 | 2 | UniProt (Q5SHN5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | THERMUS THERMOPHILUS HB8 | EF-G |
| 26 | EC, Z (B0, D0) | 50S RIBOSOMAL PROTEIN L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) | THERMUS THERMOPHILUS HB8 | |
| 27 | AA, FC (B1, D1) | 50S RIBOSOMAL PROTEIN L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) | THERMUS THERMOPHILUS HB8 | |
| 28 | BA, GC (B2, D2) | 50S RIBOSOMAL PROTEIN L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) | THERMUS THERMOPHILUS HB8 | TL5 |
| 29 | CA, HC (B3, D3) | 50S RIBOSOMAL PROTEIN L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) | THERMUS THERMOPHILUS HB8 | |
| 30 | DA, IC (B4, D4) | 50S RIBOSOMAL PROTEIN L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) | THERMUS THERMOPHILUS HB8 | |
| 31 | EA, JC (B5, D5) | 50S RIBOSOMAL PROTEIN L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) | THERMUS THERMOPHILUS HB8 | |
| 32 | FA, KC (B6, D6) | 50S RIBOSOMAL PROTEIN L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) | THERMUS THERMOPHILUS HB8 | |
| 33 | GA, LC (B7, D7) | 50S RIBOSOMAL PROTEIN L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | THERMUS THERMOPHILUS HB8 | |
| 34 | HA, MC (B8, D8) | 50S RIBOSOMAL PROTEIN L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) | THERMUS THERMOPHILUS HB8 | |
| 35 | IA, NC (B9, D9) | 50S RIBOSOMAL PROTEIN L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q5SHR2) Pfam (PF00444) | THERMUS THERMOPHILUS HB8 | RIBOSOMAL PROTEIN B |
| 36 | JA, OC (BA, DA) | 23S RIBOSOMAL RNA | polymer | 2915 | 947935.4 | 2 | GenBank (55979969) | THERMUS THERMOPHILUS HB8 | |
| 37 | KA, PC (BB, DB) | 5S RIBOSOMAL RNA | polymer | 122 | 39540.6 | 2 | GenBank (55979969) | THERMUS THERMOPHILUS HB8 | |
| 38 | LA, QC (BC, DC) | 50S RIBOSOMAL PROTEIN L1 | polymer | 229 | 24872.7 | 2 | UniProt (Q5SLP7) Pfam (PF00687) | THERMUS THERMOPHILUS HB8 | |
| 39 | MA, RC (BD, DD) | 50S RIBOSOMAL PROTEIN L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | THERMUS THERMOPHILUS HB8 | |
| 40 | NA, SC (BE, DE) | 50S RIBOSOMAL PROTEIN L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) | THERMUS THERMOPHILUS HB8 | |
| 41 | OA, TC (BF, DF) | 50S RIBOSOMAL PROTEIN L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) | THERMUS THERMOPHILUS HB8 | L1E |
| 42 | PA, UC (BG, DG) | 50S RIBOSOMAL PROTEIN L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | THERMUS THERMOPHILUS HB8 | |
| 43 | QA, VC (BH, DH) | 50S RIBOSOMAL PROTEIN L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q5SHQ3) | THERMUS THERMOPHILUS HB8 | |
| 44 | RA, WC (BJ, DJ) | 50S RIBOSOMAL PROTEIN L10 | polymer | 173 | 14741.1 | 2 | THERMUS THERMOPHILUS HB8 | ||
| 45 | SA, XC (BN, DN) | 50S RIBOSOMAL PROTEIN L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) | THERMUS THERMOPHILUS HB8 | |
| 46 | TA, YC (BO, DO) | 50S RIBOSOMAL PROTEIN L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | THERMUS THERMOPHILUS HB8 | |
| 47 | UA, ZC (BP, DP) | 50S RIBOSOMAL PROTEIN L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) | THERMUS THERMOPHILUS HB8 | |
| 48 | AD, VA (BQ, DQ) | 50S RIBOSOMAL PROTEIN L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | THERMUS THERMOPHILUS HB8 | |
| 49 | BD, WA (BR, DR) | 50S RIBOSOMAL PROTEIN L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) | THERMUS THERMOPHILUS HB8 | |
| 50 | CD, XA (BS, DS) | 50S RIBOSOMAL PROTEIN L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) | THERMUS THERMOPHILUS HB8 | TL24 |
| 51 | DD, YA (BT, DT) | 50S RIBOSOMAL PROTEIN L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) | THERMUS THERMOPHILUS HB8 | |
| 52 | ED, ZA (BU, DU) | 50S RIBOSOMAL PROTEIN L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) | THERMUS THERMOPHILUS HB8 | |
| 53 | AB, FD (BV, DV) | 50S RIBOSOMAL PROTEIN L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) | THERMUS THERMOPHILUS HB8 | |
| 54 | BB, GD (BW, DW) | 50S RIBOSOMAL PROTEIN L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) | THERMUS THERMOPHILUS HB8 | |
| 55 | CB, HD (BX, DX) | 50S RIBOSOMAL PROTEIN L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) | THERMUS THERMOPHILUS HB8 | |
| 56 | DB, ID (BY, DY) | 50S RIBOSOMAL PROTEIN L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | THERMUS THERMOPHILUS HB8 | |
| 57 | EB, JD (BZ, DZ) | 50S RIBOSOMAL PROTEIN L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | THERMUS THERMOPHILUS HB8 | TL5 |
| 58 | KD, LD, PD, QD, RD... (AD, AN, B4, B9, CD...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 59 | MD, TD (AY, CY) | FUSIDIC ACID | non-polymer | 516.7 | 2 | Chemie (FUA) | |||
| 60 | ND, UD (AY, CY) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) | |||
| 61 | OD, VD (AY, CY) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 114 |
| Total formula weight | 4652844.4 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 2491.7 | |
| All* | Total formula weight | 4655336.1 |
