Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V8T

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)		Saccharomyces cerevisiae S288CL5,Large ribosomal subunit protein uL2-A,RP8,YL6
2B
(B)		60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
3C
(C)		60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)		Saccharomyces cerevisiae S288CL2,Large ribosomal subunit protein uL4-A,RP2,YL2
4D
(D)		60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)		Saccharomyces cerevisiae S288CL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
5E
(E)		60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)		Saccharomyces cerevisiae S288CL17,Large ribosomal subunit protein eL6-A,RP18,YL16
6F
(F)		60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)		Saccharomyces cerevisiae S288CL6,Large ribosomal subunit protein uL30-A,RP11,YL8
7G
(G)		60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiae S288CL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
8H
(H)		60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)		Saccharomyces cerevisiae S288CL8,RP24,YL11
9I
(I)		60S ribosomal protein L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)		Saccharomyces cerevisiae S288CL9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
10J
(J)		60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)		Saccharomyces cerevisiae S288CL16,Large ribosomal subunit protein uL5-A,RP39,YL22
11K
(K)		60S RIBOSOMAL PROTEIN L12polymer15513209.31SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
12L
(L)		60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL13-A
13M
(M)		60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL14-A
14N
(N)		60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)		Saccharomyces cerevisiae S288CL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
15O
(O)		Large ribosomal subunit protein uL13Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiae S288C60S ribosomal protein L16-A,L13a,L21,RP22,YL15
16P
(P)		60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiae S288CL20A,Large ribosomal subunit protein uL22-A,YL17
17Q
(Q)		60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL18-A,RP28
18R
(R)		60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)		Saccharomyces cerevisiae S288CL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
19S
(S)		60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)		Saccharomyces cerevisiae S288CL18a
20T
(T)		60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL21-A
21U
(U)		60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)		Saccharomyces cerevisiae S288CL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
22V
(V)		60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)		Saccharomyces cerevisiae S288CL17a,Large ribosomal subunit protein uL14-A,YL32
23W
(W)		60S ribosomal protein L24-Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)		Saccharomyces cerevisiae S288CL30,RP29,YL21
24X
(X)		60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
25Y
(Y)		60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiae S288CL33,Large ribosomal subunit protein uL24-A,YL33
26Z
(Z)		60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL27-A
27AA
(a)		60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiae S288CL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
28BA
(b)		60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL29,YL43
29CA
(c)		60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiae S288CL32,Large ribosomal subunit protein eL30,RP73,YL38
30DA
(d)		60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiae S288CL34,Large ribosomal subunit protein eL31-A,YL28
31EA
(e)		60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL32
32FA
(f)		60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)		Saccharomyces cerevisiae S288CL37,Large ribosomal subunit protein eL33-A,RP47,YL37
33GA
(g)		60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL34-A
34HA
(h)		60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL29-A
35IA
(i)		60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)		Saccharomyces cerevisiae S288CL39,Large ribosomal subunit protein eL36-A,YL39
36JA
(j)		60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiae S288CL43,Large ribosomal subunit protein eL37-A,YL35,YP55
37KA
(k)		60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL38
38LA
(l)		60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiae S288CL46,Large ribosomal subunit protein eL39,YL40
39MA
(m)		Ubiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)		Saccharomyces cerevisiae S288C
40NA
(n)		60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)		Saccharomyces cerevisiae S288CL47,YL41
41OA
(o)		60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)		Saccharomyces cerevisiae S288CL41,Large ribosomal subunit protein eL42-A,YL27,YP44
42PA
(p)		60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)		Saccharomyces cerevisiae S288CL37a,Large ribosomal subunit protein eL43-A,YL35
43QA
(q)		Large ribosomal subunit protein uL10polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)		Saccharomyces cerevisiae S288C60S acidic ribosomal protein P0,A0,L10e
44RA
(r)		RIBOSOMAL PROTEIN P1 ALPHA,Large ribosomal subunit protein P1Apolymer15314912.81UniProt (P05318)
Pfam (PF00428)		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)P1A,60S acidic ribosomal protein P1-alpha,A1,L12eIIA,YP1alpha
45SA
(s)		RIBOSOMAL PROTEIN P2 BETApolymer463932.81SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
46TA
(t)		Probable metalloprotease ARX1polymer61467848.01UniProt (Q03862)Saccharomyces cerevisiae S288CAssociated with ribosomal export complex protein 1
47UA
(1)		ES27 OF THE 25S RRNApolymer11436810.61SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
48VA
(5)		25S RIBOSOMAL RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae S288C
49WA
(7)		5S RIBOSOMAL RNApolymer12138951.11GenBank (834774822)Saccharomyces cerevisiae S288C
50XA
(8)		5.8S RIBOSOMAL RNApolymer15850682.91GenBank (940534893)Saccharomyces cerevisiae S288C
51AB, BB, YA, ZA
(o, p, j, m)		ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
r: 1 - 47 (PDB: 4V8T)
r: 48 - 153 (UniProt: P05318)
t: 1 - 593 (UniProt: Q03862)
PDBExternal DatabaseDetails
His -20-expression tag
His -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
His -15-expression tag
Asp -14-expression tag
Tyr -13-expression tag
Asp -12-expression tag
Ile -11-expression tag
Pro -10-expression tag
Thr -9-expression tag
Thr -8-expression tag
Glu -7-expression tag
Asn -6-expression tag
Leu -5-expression tag
Tyr -4-expression tag
Phe -3-expression tag
Gln -2-expression tag
Gly -1-expression tag
Ala 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2101195.8
Non-Polymers*Number of molecules4
Total formula weight261.6
All*Total formula weight2101457.5
*Water molecules are not included.

246905

PDB entries from 2025-12-31

PDB statisticsPDBj update infoContact PDBjnumon