Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V8T

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A60S RIBOSOMAL PROTEIN L2-Bpolymer25427463.61UniProt (P0CX46)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P0CX45)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L5, RP8, YL6
2B60S RIBOSOMAL PROTEIN L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)MAINTENANCE OF KILLER PROTEIN 8, RP1, TRICHODERMIN RESISTANCE PROTEIN, YL1
3C60S RIBOSOMAL PROTEIN L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L2, RP2, YL2
4D60S RIBOSOMAL PROTEIN L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L1, L1A, RIBOSOMAL 5S RNA-BINDING PROTEIN, YL3
5E60S RIBOSOMAL PROTEIN L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L17, RP18, YL16
6F60S RIBOSOMAL PROTEIN L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L6, RP11, YL8
7G60S RIBOSOMAL PROTEIN L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L4, L4-2, L7A-1, MAINTENANCE OF KILLER PROTEIN 7, RP6, YL5
8H60S RIBOSOMAL PROTEIN L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L8, RP24, YL11
9I60S RIBOSOMAL PROTEIN L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L9, UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX SUBUNIT VI-REQUIRING PROTEIN
10J60S RIBOSOMAL PROTEIN L11-Bpolymer17419755.71UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P0C0W9)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L16, RP39, YL22
11K60S RIBOSOMAL PROTEIN L12polymer15513209.31SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
12L60S RIBOSOMAL PROTEIN L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
13M60S RIBOSOMAL PROTEIN L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
14N60S RIBOSOMAL PROTEIN L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L13, RP15R, YL10, YP18
15O60S RIBOSOMAL PROTEIN L16-Apolymer19922298.31UniProt (P26784)
Pfam (PF00572)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L13A, L21, RP22, YL15
16P60S RIBOSOMAL PROTEIN L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L20A, YL17
17Q60S RIBOSOMAL PROTEIN L18-Bpolymer18620609.31UniProt (P0CX50)
Pfam (PF17135)
UniProt (by SIFTS) (P0CX49)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RP28
18R60S RIBOSOMAL PROTEIN L19-Bpolymer18921762.31UniProt (P0CX83)
Pfam (PF01280)
UniProt (by SIFTS) (P0CX82)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L23, RP15L, RP33, YL14
19S60S RIBOSOMAL PROTEIN L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L18A
20T60S RIBOSOMAL PROTEIN L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
21U60S RIBOSOMAL PROTEIN L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L1C, RP4, YL31
22V60S RIBOSOMAL PROTEIN L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L17A, YL32
23W60S RIBOSOMAL PROTEIN L24-Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L30, RP29, YL21
24X60S RIBOSOMAL PROTEIN L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RP16L, YL25, YP42'
25Y60S RIBOSOMAL PROTEIN L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L33, YL33
26Z60S RIBOSOMAL PROTEIN L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
27a60S RIBOSOMAL PROTEIN L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
28b60S RIBOSOMAL PROTEIN L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
29c60S RIBOSOMAL PROTEIN L32polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
30d60S RIBOSOMAL PROTEIN L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
31e60S RIBOSOMAL PROTEIN L30polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
32f60S RIBOSOMAL PROTEIN L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
33g60S RIBOSOMAL PROTEIN L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
34h60S RIBOSOMAL PROTEIN L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
35i60S RIBOSOMAL PROTEIN L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
36j60S RIBOSOMAL PROTEIN L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
37k60S RIBOSOMAL PROTEIN L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
38l60S RIBOSOMAL PROTEIN L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L46, YL40
39m60S RIBOSOMAL PROTEIN L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)60S RIBOSOMAL PROTEIN L40, CEP52
40n60S RIBOSOMAL PROTEIN L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L47, YL41
41o60S RIBOSOMAL PROTEIN L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L41, YL27, YP44
42p60S RIBOSOMAL PROTEIN L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)L37A, YL35
43q60S ACIDIC RIBOSOMAL PROTEIN P0polymer31233289.81UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)A0, L10E
44rRIBOSOMAL PROTEIN P1 ALPHApolymer474017.91SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
45sRIBOSOMAL PROTEIN P2 BETApolymer463932.81SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
46tPROBABLE METALLOPROTEASE ARX1polymer61467848.01SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)ARX1, ASSOCIATED WITH RIBOSOMAL EXPORT COMPLEX PROTEIN 1
471ES27 OF THE 25S RRNApolymer11436810.61SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
48525S RIBOSOMAL RNApolymer33961097493.91GenBank (BK006945)SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
4975S RIBOSOMAL RNApolymer12138951.11GenBank (AE016820)SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
5085.8S RIBOSOMAL RNApolymer15850682.91GenBank (HQ026735)SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
51o, p, j, mZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
J: 1 - 174 (UniProt: Q3E757)
PDBExternal DatabaseDetails
Ala 3Thr 3conflict
O: 1 - 199 (UniProt: P26784)
PDBExternal DatabaseDetails
Ser 3Val 3microheterogeneity
Gln 4Glu 4microheterogeneity
Ala 11Gly 11microheterogeneity
Asp 13Gly 13microheterogeneity
Leu 16Val 16microheterogeneity
Thr 22Val 22microheterogeneity
Ile 23Val 23microheterogeneity
Val 27Leu 27microheterogeneity
Ala 40Glu 40microheterogeneity
Leu 80Phe 80microheterogeneity
Ile 84Leu 84microheterogeneity
Ile 104Val 104microheterogeneity
Asp 158Ala 158microheterogeneity
Arg 163Ser 163microheterogeneity
Ser 179Ala 179microheterogeneity
Ser 182Asn 182microheterogeneity
Ala 184Thr 184microheterogeneity
Ala 186Ser 186microheterogeneity
Ala 196Ser 196microheterogeneity
Leu 197Phe 197microheterogeneity
q: 1 - 312 (UniProt: P05317)
PDBExternal DatabaseDetails
Unk 199Ser 199SEE REMARK 999
Unk 200Ser 200SEE REMARK 999
Unk 201Ile 201SEE REMARK 999
Unk 202Leu 202SEE REMARK 999
Unk 203Asp 203SEE REMARK 999
Unk 204Ile 204SEE REMARK 999
Unk 205Thr 205SEE REMARK 999
Unk 206Asp 206SEE REMARK 999
Unk 207Glu 207SEE REMARK 999
Unk 208Glu 208SEE REMARK 999
Unk 209Leu 209SEE REMARK 999
Unk 210Val 210SEE REMARK 999
Unk 211Ser 211SEE REMARK 999
Unk 212His 212SEE REMARK 999
Unk 213Phe 213SEE REMARK 999
Unk 214Val 214SEE REMARK 999
Unk 215Ser 215SEE REMARK 999
Unk 216Ala 216SEE REMARK 999
Unk 217Val 217SEE REMARK 999
Unk 218Ser 218SEE REMARK 999
Unk 219Thr 219SEE REMARK 999
Unk 220Ile 220SEE REMARK 999
Unk 221Ala 221SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2089892.8
Non-Polymers*Number of molecules4
Total formula weight261.6
All*Total formula weight2090154.5
*Water molecules are not included.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon