4V8M
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A0 | 40S RIBOSOMAL PROTEIN S3A, PUTATIVE | polymer | 256 | 29477.3 | 1 | UniProt (Q38BK6) Pfam (PF01015) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEINS S1E |
2 | A1 | 40S RIBOSOMAL PROTEIN S4, PUTATIVE | polymer | 273 | 30704.2 | 1 | UniProt (Q386F2) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S4E |
3 | A2 | 40S RIBOSOMAL PROTEIN S5, PUTATIVE | polymer | 190 | 21424.9 | 1 | UniProt (Q385D9) Pfam (PF00177) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S7 |
4 | A3 | 40S RIBOSOMAL PROTEIN S6 | polymer | 250 | 28507.4 | 1 | UniProt (Q38CL9) Pfam (PF01092) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S6E |
5 | A4 | RIBOSOMAL PROTEIN S7, PUTATIVE | polymer | 202 | 23889.2 | 1 | UniProt (Q38FD9) Pfam (PF01251) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S7E |
6 | A5 | 40S RIBOSOMAL PROTEIN S8 | polymer | 220 | 25001.4 | 1 | UniProt (Q57YL6) Pfam (PF01201) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S8E |
7 | A6 | 40S RIBOSOMAL PROTEIN S9, PUTATIVE | polymer | 190 | 22098.7 | 1 | UniProt (Q57VP3) Pfam (PF00163) Pfam (PF01479) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S4 |
8 | A7 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN | polymer | 318 | 34727.8 | 1 | UniProt (Q383E1) Pfam (PF00400) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN TRACK1 |
9 | A8 | RIBOSOMAL PROTEIN S29, PUTATIVE | polymer | 57 | 6679.8 | 1 | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS14 | |
10 | A9 | UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVE | polymer | 153 | 16936.7 | 1 | UniProt (Q57WI3) Pfam (PF00240) Pfam (PF01599) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS31E |
11 | AC | 40S RIBOSOMAL PROTEIN SA, PUTATIVE | polymer | 277 | 31396.0 | 1 | UniProt (Q383I8) Pfam (PF00318) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S2 |
12 | AD | 40S RIBOSOMAL PROTEIN S10, PUTATIVE | polymer | 172 | 19322.8 | 1 | UniProt (Q38B66) Pfam (PF03501) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S10E |
13 | AE | 40S RIBOSOMAL PROTEINS S11, PUTATIVE | polymer | 174 | 20132.5 | 1 | UniProt (Q38CI4) Pfam (PF16205) Pfam (PF00366) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S17 |
14 | AF | 40S RIBOSOMAL PROTEIN S12 | polymer | 144 | 15889.2 | 1 | UniProt (Q385Y8) Pfam (PF01248) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S12E |
15 | AG | 40S RIBOSOMAL PROTEIN S13, PUTATIVE | polymer | 151 | 17347.6 | 1 | UniProt (Q586C2) Pfam (PF08069) Pfam (PF00312) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S15 |
16 | AH | 40S RIBOSOMAL PROTEIN S14 | polymer | 144 | 15540.9 | 1 | UniProt (Q4FKG9) Pfam (PF00411) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN S11 |
17 | AI | 40S RIBOSOMAL PROTEIN S15, PUTATIVE | polymer | 152 | 17512.4 | 1 | UniProt (Q57XN7) Pfam (PF00203) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS19 |
18 | AJ | 40S RIBOSOMAL PROTEIN S15A, PUTATIVE | polymer | 130 | 14669.3 | 1 | UniProt (Q580K6) Pfam (PF00410) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS8 |
19 | AK | 40S RIBOSOMAL PROTEIN S16, PUTATIVE | polymer | 149 | 17032.0 | 1 | UniProt (Q57VV0) Pfam (PF00380) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS9 |
20 | AL | 40S RIBOSOMAL PROTEIN S17, PUTATIVE | polymer | 142 | 16259.2 | 1 | UniProt (Q382Z8) Pfam (PF00833) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS17E |
21 | AM | 40S RIBOSOMAL PROTEIN S18, PUTATIVE | polymer | 153 | 17548.5 | 1 | UniProt (Q38B69) Pfam (PF00416) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS13 |
22 | AO | RIBOSOMAL PROTEIN S19, PUTATIVE | polymer | 167 | 18891.5 | 1 | UniProt (Q583K7) Pfam (PF01090) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS19E |
23 | AP | 40S RIBOSOMAL PROTEIN S2, PUTATIVE | polymer | 266 | 28688.1 | 1 | UniProt (Q388D3) Pfam (PF00333) Pfam (PF03719) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS5 |
24 | AQ | RIBOSOMAL PROTEIN S20, PUTATIVE | polymer | 117 | 13248.5 | 1 | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS10 | |
25 | AR | 40S RIBOSOMAL PROTEIN S21, PUTATIVE | polymer | 194 | 21156.7 | 1 | UniProt (Q385B8) Pfam (PF01249) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS21E |
26 | AS | 40S RIBOSOMAL PROTEIN S23, PUTATIVE | polymer | 143 | 15963.7 | 1 | UniProt (Q38CD1) Pfam (PF00164) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS12 |
27 | AT | 40S RIBOSOMAL PROTEIN S24 | polymer | 137 | 15722.8 | 1 | UniProt (Q38AM9) Pfam (PF01282) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS24E |
28 | AU | 40S RIBOSOMAL PROTEIN S25, PUTATIVE | polymer | 113 | 12589.1 | 1 | UniProt (Q57XX0) Pfam (PF03297) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS25E |
29 | AV | RIBOSOMAL PROTEIN S26, PUTATIVE | polymer | 111 | 12837.2 | 1 | UniProt (Q384J9) Pfam (PF01283) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS26E |
30 | AW | 40S RIBOSOMAL PROTEIN S27, PUTATIVE | polymer | 86 | 9648.3 | 1 | UniProt (Q383V7) Pfam (PF01667) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS27E |
31 | AX | 40S RIBOSOMAL PROTEIN S3, PUTATIVE | polymer | 214 | 24259.4 | 1 | UniProt (Q389I7) Pfam (PF07650) Pfam (PF00189) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS3 |
32 | AY | 40S RIBOSOMAL PROTEIN S30, PUTATIVE | polymer | 66 | 7454.9 | 1 | UniProt (Q584U5) Pfam (PF04758) In PDB | TRYPANOSOMA BRUCEI BRUCEI | RIBOSOMAL PROTEIN RPS30E |
33 | AZ | 40S RIBOSOMAL PROTEIN S33, PUTATIVE | polymer | 103 | 11186.9 | 1 | UniProt (Q57U30) Pfam (PF01200) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
34 | BA | ALPHA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNA | polymer | 1847 | 595796.4 | 1 | GenBank (X14553) | TRYPANOSOMA BRUCEI | |
35 | BB | BETA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNA | polymer | 1465 | 471450.1 | 1 | GenBank (X14553) | TRYPANOSOMA BRUCEI | |
36 | BC | 5.8S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 169 | 54224.1 | 1 | TRYPANOSOMA BRUCEI | ||
37 | BD | 5S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 119 | 38316.7 | 1 | TRYPANOSOMA BRUCEI | ||
38 | BE | SHORT RRNA-I OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 210 | 67234.6 | 1 | TRYPANOSOMA BRUCEI | ||
39 | BF | SHORT RRNA-II OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 73 | 23079.6 | 1 | TRYPANOSOMA BRUCEI | ||
40 | BG | SHORT RRNA-III OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 182 | 58889.9 | 1 | TRYPANOSOMA BRUCEI | ||
41 | BH | SHORT RRNA-IV OF THE LARGE RIBOSOMAL SUBUNIT | polymer | 135 | 43388.6 | 1 | TRYPANOSOMA BRUCEI | ||
42 | BI | 60S RIBOSOMAL PROTEIN L18 | polymer | 193 | 21929.2 | 1 | UniProt (P50885) Pfam (PF17135) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
43 | BJ | RIBOSOMAL PROTEIN | polymer | 214 | 24640.2 | 1 | UniProt (Q383V8) Pfam (PF00687) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
44 | BK | 60S RIBOSOMAL PROTEIN L10, PUTATIVE | polymer | 213 | 24785.3 | 1 | UniProt (Q38EC5) Pfam (PF00252) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
45 | BL | 60S RIBOSOMAL PROTEIN L11, PUTATIVE | polymer | 194 | 22420.4 | 1 | UniProt (Q38EI9) Pfam (PF00281) Pfam (PF00673) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
46 | BM | 60S RIBOSOMAL PROTEIN L12, PUTATIVE | polymer | 164 | 17594.7 | 1 | UniProt (Q57YK4) Pfam (PF03946) Pfam (PF00298) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
47 | BN | 60S RIBOSOMAL PROTEIN L13 | polymer | 218 | 25492.0 | 1 | UniProt (Q57V54) Pfam (PF01294) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
48 | BO | 60S RIBOSOMAL PROTEIN L13A, PUTATIVE | polymer | 222 | 25775.8 | 1 | UniProt (Q585J5) Pfam (PF00572) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
49 | BP | PROBABLE 60S RIBOSOMAL PROTEIN L14 | polymer | 189 | 21742.8 | 1 | UniProt (P55842) Pfam (PF00467) Pfam (PF01929) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
50 | BQ | RIBOSOMAL PROTEIN L15 | polymer | 221 | 26461.0 | 1 | UniProt (Q38CY7) Pfam (PF00827) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
51 | BR | 60S RIBOSOMAL PROTEIN L17, PUTATIVE | polymer | 166 | 19147.7 | 1 | UniProt (Q385T6) Pfam (PF00237) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
52 | BS | 60S RIBOSOMAL PROTEIN L18A | polymer | 179 | 20950.5 | 1 | UniProt (Q382C4) Pfam (PF01775) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
53 | BT | 60S RIBOSOMAL PROTEIN L19, PUTATIVE | polymer | 260 | 29494.1 | 1 | UniProt (Q57ZI7) Pfam (PF01280) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
54 | BU | 60S RIBOSOMAL PROTEIN L21E, PUTATIVE | polymer | 159 | 18043.3 | 1 | UniProt (Q4FKD4) Pfam (PF01157) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
55 | BV | 60S RIBOSOMAL PROTEIN L22, PUTATIVE | polymer | 130 | 15288.9 | 1 | UniProt (Q383R3) Pfam (PF01776) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
56 | BW | 60S RIBOSOMAL PROTEIN L23, PUTATIVE | polymer | 139 | 14989.7 | 1 | UniProt (Q38DP2) Pfam (PF00238) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
57 | BX | 60S RIBOSOMAL PROTEIN L23A | polymer | 164 | 18211.6 | 1 | UniProt (Q57ZH2) Pfam (PF00276) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
58 | BY | 60S RIBOSOMAL PROTEIN L24, PUTATIVE | polymer | 125 | 14633.3 | 1 | UniProt (Q38B56) Pfam (PF01246) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
59 | BZ | 60S RIBOSOMAL PROTEIN L26, PUTATIVE | polymer | 143 | 16497.5 | 1 | UniProt (Q38D25) Pfam (PF16906) Pfam (PF00467) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
60 | Ba | 60S RIBOSOMAL PROTEIN L27, PUTATIVE | polymer | 133 | 15618.5 | 1 | UniProt (Q381J6) Pfam (PF00467) Pfam (PF01777) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
61 | Bb | 60S RIBOSOMAL PROTEIN L27A | polymer | 145 | 16307.2 | 1 | UniProt (Q38DN9) Pfam (PF00828) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
62 | Bc | 60S RIBOSOMAL PROTEIN L28, PUTATIVE | polymer | 146 | 16901.0 | 1 | UniProt (Q385E9) Pfam (PF01778) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
63 | Bd | 60S RIBOSOMAL PROTEIN L29, PUTATIVE | polymer | 71 | 8244.6 | 1 | UniProt (Q383S6) Pfam (PF01779) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
64 | Be | 60S RIBOSOMAL PROTEIN L2, PUTATIVE | polymer | 260 | 28372.1 | 1 | UniProt (Q57W56) Pfam (PF00181) Pfam (PF03947) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
65 | Bf | RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE | polymer | 429 | 48803.0 | 1 | UniProt (Q581Q1) Pfam (PF00297) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
66 | Bg | 60S RIBOSOMAL PROTEIN L30 | polymer | 105 | 11531.4 | 1 | UniProt (Q38BI9) Pfam (PF01248) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
67 | Bh | 60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVE | polymer | 188 | 21752.9 | 1 | UniProt (Q38DH8) Pfam (PF01198) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
68 | Bi | 60S RIBOSOMAL PROTEIN L32, PUTATIVE | polymer | 132 | 15432.2 | 1 | UniProt (Q38CL1) Pfam (PF01655) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
69 | Bj | 60S RIBOSOMAL PROTEIN L34, PUTATIVE | polymer | 170 | 19396.3 | 1 | UniProt (Q383V6) Pfam (PF01199) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
70 | Bk | 60S RIBOSOMAL PROTEIN L35, PUTATIVE | polymer | 127 | 15187.3 | 1 | UniProt (Q38FW8) Pfam (PF00831) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
71 | Bl | 60S RIBOSOMAL PROTEIN L35A, PUTATIVE | polymer | 149 | 17061.0 | 1 | UniProt (Q584G9) Pfam (PF01247) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
72 | Bm | RIBOSOMAL PROTEIN L36, PUTATIVE | polymer | 109 | 12492.0 | 1 | UniProt (Q38CY6) Pfam (PF01158) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
73 | Bn | RIBOSOMAL PROTEIN L37 | polymer | 84 | 10128.9 | 1 | UniProt (Q386L1) Pfam (PF01907) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
74 | Bo | 60S RIBOSOMAL PROTEIN L37A, PUTATIVE | polymer | 93 | 10482.3 | 1 | UniProt (Q38AW9) Pfam (PF01780) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
75 | Bp | 60S RIBOSOMAL PROTEIN L38, PUTATIVE | polymer | 82 | 9527.4 | 1 | UniProt (Q38FV6) Pfam (PF01781) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
76 | Bq | 60S RIBOSOMAL PROTEIN L39, PUTATIVE | polymer | 51 | 6568.0 | 1 | UniProt (Q57UJ8) Pfam (PF00832) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
77 | Br | 60S RIBOSOMAL PROTEIN L4 | polymer | 374 | 41941.2 | 1 | UniProt (Q582N2) Pfam (PF00573) Pfam (PF14374) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
78 | Bs | UBIQUITIN-60S RIBOSOMAL PROTEIN L40 | polymer | 128 | 14685.3 | 1 | UniProt (P21899) Pfam (PF00240) Pfam (PF01020) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
79 | Bt | 60S RIBOSOMAL PROTEIN L44 | polymer | 106 | 12488.8 | 1 | UniProt (D7SG81) Pfam (PF00935) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
80 | Bu | 60S RIBOSOMAL PROTEIN L5, PUTATIVE | polymer | 308 | 34710.2 | 1 | UniProt (Q38CY8) Pfam (PF17144) Pfam (PF14204) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
81 | Bv | 60S RIBOSOMAL PROTEIN L6, PUTATIVE | polymer | 192 | 21232.0 | 1 | UniProt (Q389K1) Pfam (PF01159) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
82 | Bw | 60S RIBOSOMAL PROTEIN L7, PUTATIVE | polymer | 257 | 29416.7 | 1 | UniProt (Q57V35) Pfam (PF08079) Pfam (PF00327) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
83 | Bx | 60S RIBOSOMAL PROTEIN L7A, PUTATIVE | polymer | 276 | 30945.6 | 1 | UniProt (Q57VM1) Pfam (PF01248) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
84 | By | 60S RIBOSOMAL PROTEIN L9, PUTATIVE | polymer | 189 | 21897.4 | 1 | UniProt (Q38CD0) Pfam (PF00347) In PDB | TRYPANOSOMA BRUCEI BRUCEI | |
85 | AA | 18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT | polymer | 2251 | 724377.1 | 1 | GenBank (M12676) | TRYPANOSOMA BRUCEI | |
86 | AB | E-SITE TRNA | polymer | 73 | 23546.0 | 1 | TRYPANOSOMA BRUCEI |
Sequence modifications
BA: 1 - 1847 (GenBank: X14553)
BB: 253 - 1548 (GenBank: X14553)
PDB | External Database | Details |
---|---|---|
- | C 549 | deletion |
- | U 550 | deletion |
- | U 551 | deletion |
- | C 552 | deletion |
- | C 553 | deletion |
- | G 554 | deletion |
- | G 555 | deletion |
- | C 566 | deletion |
- | C 567 | deletion |
- | G 568 | deletion |
- | G 569 | deletion |
- | U 570 | deletion |
- | G 571 | deletion |
- | G 572 | deletion |
- | G 573 | deletion |
A 799 | - | insertion |
PDB | External Database | Details |
---|---|---|
G 484 | - | insertion |
U 485 | - | insertion |
G 486 | - | insertion |
A 487 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 86 |
Total formula weight | 3603269.4 | |
All* | Total formula weight | 3603269.4 |