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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V8M

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A040S RIBOSOMAL PROTEIN S3A, PUTATIVEpolymer25629477.31UniProt (Q38BK6)
Pfam (PF01015)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEINS S1E
2A140S RIBOSOMAL PROTEIN S4, PUTATIVEpolymer27330704.21UniProt (Q386F2)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S4E
3A240S RIBOSOMAL PROTEIN S5, PUTATIVEpolymer19021424.91UniProt (Q385D9)
Pfam (PF00177)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S7
4A340S RIBOSOMAL PROTEIN S6polymer25028507.41UniProt (Q38CL9)
Pfam (PF01092)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S6E
5A4RIBOSOMAL PROTEIN S7, PUTATIVEpolymer20223889.21UniProt (Q38FD9)
Pfam (PF01251)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S7E
6A540S RIBOSOMAL PROTEIN S8polymer22025001.41UniProt (Q57YL6)
Pfam (PF01201)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S8E
7A640S RIBOSOMAL PROTEIN S9, PUTATIVEpolymer19022098.71UniProt (Q57VP3)
Pfam (PF00163)
Pfam (PF01479)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S4
8A7GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEINpolymer31834727.81UniProt (Q383E1)
Pfam (PF00400)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN TRACK1
9A8RIBOSOMAL PROTEIN S29, PUTATIVEpolymer576679.81TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS14
10A9UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVEpolymer15316936.71UniProt (Q57WI3)
Pfam (PF00240)
Pfam (PF01599)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS31E
11AC40S RIBOSOMAL PROTEIN SA, PUTATIVEpolymer27731396.01UniProt (Q383I8)
Pfam (PF00318)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S2
12AD40S RIBOSOMAL PROTEIN S10, PUTATIVEpolymer17219322.81UniProt (Q38B66)
Pfam (PF03501)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S10E
13AE40S RIBOSOMAL PROTEINS S11, PUTATIVEpolymer17420132.51UniProt (Q38CI4)
Pfam (PF16205)
Pfam (PF00366)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S17
14AF40S RIBOSOMAL PROTEIN S12polymer14415889.21UniProt (Q385Y8)
Pfam (PF01248)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S12E
15AG40S RIBOSOMAL PROTEIN S13, PUTATIVEpolymer15117347.61UniProt (Q586C2)
Pfam (PF08069)
Pfam (PF00312)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S15
16AH40S RIBOSOMAL PROTEIN S14polymer14415540.91UniProt (Q4FKG9)
Pfam (PF00411)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S11
17AI40S RIBOSOMAL PROTEIN S15, PUTATIVEpolymer15217512.41UniProt (Q57XN7)
Pfam (PF00203)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS19
18AJ40S RIBOSOMAL PROTEIN S15A, PUTATIVEpolymer13014669.31UniProt (Q580K6)
Pfam (PF00410)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS8
19AK40S RIBOSOMAL PROTEIN S16, PUTATIVEpolymer14917032.01UniProt (Q57VV0)
Pfam (PF00380)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS9
20AL40S RIBOSOMAL PROTEIN S17, PUTATIVEpolymer14216259.21UniProt (Q382Z8)
Pfam (PF00833)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS17E
21AM40S RIBOSOMAL PROTEIN S18, PUTATIVEpolymer15317548.51UniProt (Q38B69)
Pfam (PF00416)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS13
22AORIBOSOMAL PROTEIN S19, PUTATIVEpolymer16718891.51UniProt (Q583K7)
Pfam (PF01090)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS19E
23AP40S RIBOSOMAL PROTEIN S2, PUTATIVEpolymer26628688.11UniProt (Q388D3)
Pfam (PF00333)
Pfam (PF03719)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS5
24AQRIBOSOMAL PROTEIN S20, PUTATIVEpolymer11713248.51TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS10
25AR40S RIBOSOMAL PROTEIN S21, PUTATIVEpolymer19421156.71UniProt (Q385B8)
Pfam (PF01249)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS21E
26AS40S RIBOSOMAL PROTEIN S23, PUTATIVEpolymer14315963.71UniProt (Q38CD1)
Pfam (PF00164)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS12
27AT40S RIBOSOMAL PROTEIN S24polymer13715722.81UniProt (Q38AM9)
Pfam (PF01282)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS24E
28AU40S RIBOSOMAL PROTEIN S25, PUTATIVEpolymer11312589.11UniProt (Q57XX0)
Pfam (PF03297)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS25E
29AVRIBOSOMAL PROTEIN S26, PUTATIVEpolymer11112837.21UniProt (Q384J9)
Pfam (PF01283)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS26E
30AW40S RIBOSOMAL PROTEIN S27, PUTATIVEpolymer869648.31UniProt (Q383V7)
Pfam (PF01667)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS27E
31AX40S RIBOSOMAL PROTEIN S3, PUTATIVEpolymer21424259.41UniProt (Q389I7)
Pfam (PF07650)
Pfam (PF00189)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS3
32AY40S RIBOSOMAL PROTEIN S30, PUTATIVEpolymer667454.91UniProt (Q584U5)
Pfam (PF04758)
In PDB		TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS30E
33AZ40S RIBOSOMAL PROTEIN S33, PUTATIVEpolymer10311186.91UniProt (Q57U30)
Pfam (PF01200)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
34BAALPHA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNApolymer1847595796.41GenBank (X14553)TRYPANOSOMA BRUCEI
35BBBETA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNApolymer1465471450.11GenBank (X14553)TRYPANOSOMA BRUCEI
36BC5.8S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITpolymer16954224.11TRYPANOSOMA BRUCEI
37BD5S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITpolymer11938316.71TRYPANOSOMA BRUCEI
38BESHORT RRNA-I OF THE LARGE RIBOSOMAL SUBUNITpolymer21067234.61TRYPANOSOMA BRUCEI
39BFSHORT RRNA-II OF THE LARGE RIBOSOMAL SUBUNITpolymer7323079.61TRYPANOSOMA BRUCEI
40BGSHORT RRNA-III OF THE LARGE RIBOSOMAL SUBUNITpolymer18258889.91TRYPANOSOMA BRUCEI
41BHSHORT RRNA-IV OF THE LARGE RIBOSOMAL SUBUNITpolymer13543388.61TRYPANOSOMA BRUCEI
42BI60S RIBOSOMAL PROTEIN L18polymer19321929.21UniProt (P50885)
Pfam (PF17135)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
43BJRIBOSOMAL PROTEINpolymer21424640.21UniProt (Q383V8)
Pfam (PF00687)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
44BK60S RIBOSOMAL PROTEIN L10, PUTATIVEpolymer21324785.31UniProt (Q38EC5)
Pfam (PF00252)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
45BL60S RIBOSOMAL PROTEIN L11, PUTATIVEpolymer19422420.41UniProt (Q38EI9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
46BM60S RIBOSOMAL PROTEIN L12, PUTATIVEpolymer16417594.71UniProt (Q57YK4)
Pfam (PF03946)
Pfam (PF00298)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
47BN60S RIBOSOMAL PROTEIN L13polymer21825492.01UniProt (Q57V54)
Pfam (PF01294)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
48BO60S RIBOSOMAL PROTEIN L13A, PUTATIVEpolymer22225775.81UniProt (Q585J5)
Pfam (PF00572)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
49BPPROBABLE 60S RIBOSOMAL PROTEIN L14polymer18921742.81UniProt (P55842)
Pfam (PF00467)
Pfam (PF01929)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
50BQRIBOSOMAL PROTEIN L15polymer22126461.01UniProt (Q38CY7)
Pfam (PF00827)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
51BR60S RIBOSOMAL PROTEIN L17, PUTATIVEpolymer16619147.71UniProt (Q385T6)
Pfam (PF00237)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
52BS60S RIBOSOMAL PROTEIN L18Apolymer17920950.51UniProt (Q382C4)
Pfam (PF01775)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
53BT60S RIBOSOMAL PROTEIN L19, PUTATIVEpolymer26029494.11UniProt (Q57ZI7)
Pfam (PF01280)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
54BU60S RIBOSOMAL PROTEIN L21E, PUTATIVEpolymer15918043.31UniProt (Q4FKD4)
Pfam (PF01157)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
55BV60S RIBOSOMAL PROTEIN L22, PUTATIVEpolymer13015288.91UniProt (Q383R3)
Pfam (PF01776)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
56BW60S RIBOSOMAL PROTEIN L23, PUTATIVEpolymer13914989.71UniProt (Q38DP2)
Pfam (PF00238)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
57BX60S RIBOSOMAL PROTEIN L23Apolymer16418211.61UniProt (Q57ZH2)
Pfam (PF00276)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
58BY60S RIBOSOMAL PROTEIN L24, PUTATIVEpolymer12514633.31UniProt (Q38B56)
Pfam (PF01246)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
59BZ60S RIBOSOMAL PROTEIN L26, PUTATIVEpolymer14316497.51UniProt (Q38D25)
Pfam (PF16906)
Pfam (PF00467)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
60Ba60S RIBOSOMAL PROTEIN L27, PUTATIVEpolymer13315618.51UniProt (Q381J6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
61Bb60S RIBOSOMAL PROTEIN L27Apolymer14516307.21UniProt (Q38DN9)
Pfam (PF00828)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
62Bc60S RIBOSOMAL PROTEIN L28, PUTATIVEpolymer14616901.01UniProt (Q385E9)
Pfam (PF01778)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
63Bd60S RIBOSOMAL PROTEIN L29, PUTATIVEpolymer718244.61UniProt (Q383S6)
Pfam (PF01779)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
64Be60S RIBOSOMAL PROTEIN L2, PUTATIVEpolymer26028372.11UniProt (Q57W56)
Pfam (PF00181)
Pfam (PF03947)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
65BfRIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVEpolymer42948803.01UniProt (Q581Q1)
Pfam (PF00297)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
66Bg60S RIBOSOMAL PROTEIN L30polymer10511531.41UniProt (Q38BI9)
Pfam (PF01248)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
67Bh60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVEpolymer18821752.91UniProt (Q38DH8)
Pfam (PF01198)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
68Bi60S RIBOSOMAL PROTEIN L32, PUTATIVEpolymer13215432.21UniProt (Q38CL1)
Pfam (PF01655)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
69Bj60S RIBOSOMAL PROTEIN L34, PUTATIVEpolymer17019396.31UniProt (Q383V6)
Pfam (PF01199)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
70Bk60S RIBOSOMAL PROTEIN L35, PUTATIVEpolymer12715187.31UniProt (Q38FW8)
Pfam (PF00831)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
71Bl60S RIBOSOMAL PROTEIN L35A, PUTATIVEpolymer14917061.01UniProt (Q584G9)
Pfam (PF01247)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
72BmRIBOSOMAL PROTEIN L36, PUTATIVEpolymer10912492.01UniProt (Q38CY6)
Pfam (PF01158)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
73BnRIBOSOMAL PROTEIN L37polymer8410128.91UniProt (Q386L1)
Pfam (PF01907)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
74Bo60S RIBOSOMAL PROTEIN L37A, PUTATIVEpolymer9310482.31UniProt (Q38AW9)
Pfam (PF01780)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
75Bp60S RIBOSOMAL PROTEIN L38, PUTATIVEpolymer829527.41UniProt (Q38FV6)
Pfam (PF01781)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
76Bq60S RIBOSOMAL PROTEIN L39, PUTATIVEpolymer516568.01UniProt (Q57UJ8)
Pfam (PF00832)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
77Br60S RIBOSOMAL PROTEIN L4polymer37441941.21UniProt (Q582N2)
Pfam (PF00573)
Pfam (PF14374)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
78BsUBIQUITIN-60S RIBOSOMAL PROTEIN L40polymer12814685.31UniProt (P21899)
Pfam (PF00240)
Pfam (PF01020)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
79Bt60S RIBOSOMAL PROTEIN L44polymer10612488.81UniProt (D7SG81)
Pfam (PF00935)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
80Bu60S RIBOSOMAL PROTEIN L5, PUTATIVEpolymer30834710.21UniProt (Q38CY8)
Pfam (PF17144)
Pfam (PF14204)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
81Bv60S RIBOSOMAL PROTEIN L6, PUTATIVEpolymer19221232.01UniProt (Q389K1)
Pfam (PF01159)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
82Bw60S RIBOSOMAL PROTEIN L7, PUTATIVEpolymer25729416.71UniProt (Q57V35)
Pfam (PF08079)
Pfam (PF00327)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
83Bx60S RIBOSOMAL PROTEIN L7A, PUTATIVEpolymer27630945.61UniProt (Q57VM1)
Pfam (PF01248)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
84By60S RIBOSOMAL PROTEIN L9, PUTATIVEpolymer18921897.41UniProt (Q38CD0)
Pfam (PF00347)
In PDB		TRYPANOSOMA BRUCEI BRUCEI
85AA18S RRNA OF THE SMALL RIBOSOMAL SUBUNITpolymer2251724377.11GenBank (M12676)TRYPANOSOMA BRUCEI
86ABE-SITE TRNApolymer7323546.01TRYPANOSOMA BRUCEI
Sequence modifications
BA: 1 - 1847 (GenBank: X14553)
PDBExternal DatabaseDetails
-C 549deletion
-U 550deletion
-U 551deletion
-C 552deletion
-C 553deletion
-G 554deletion
-G 555deletion
-C 566deletion
-C 567deletion
-G 568deletion
-G 569deletion
-U 570deletion
-G 571deletion
-G 572deletion
-G 573deletion
A 799-insertion
BB: 253 - 1548 (GenBank: X14553)
PDBExternal DatabaseDetails
G 484-insertion
U 485-insertion
G 486-insertion
A 487-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3603269.4
All*Total formula weight3603269.4
*Water molecules are not included.

224004

PDB entries from 2024-08-21

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