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4V8M

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A0)
40S RIBOSOMAL PROTEIN S3A, PUTATIVEpolymer25629477.31UniProt (Q38BK6)
Pfam (PF01015)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEINS S1E
2B
(A1)
40S RIBOSOMAL PROTEIN S4, PUTATIVEpolymer27330704.21UniProt (Q386F2)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S4E
3C
(A2)
40S RIBOSOMAL PROTEIN S5, PUTATIVEpolymer19021424.91UniProt (Q385D9)
Pfam (PF00177)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S7
4D
(A3)
40S RIBOSOMAL PROTEIN S6polymer25028507.41UniProt (Q38CL9)
Pfam (PF01092)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S6E
5E
(A4)
RIBOSOMAL PROTEIN S7, PUTATIVEpolymer20223889.21UniProt (Q38FD9)
Pfam (PF01251)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S7E
6F
(A5)
40S RIBOSOMAL PROTEIN S8polymer22025001.41UniProt (Q57YL6)
Pfam (PF01201)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S8E
7G
(A6)
40S RIBOSOMAL PROTEIN S9, PUTATIVEpolymer19022098.71UniProt (Q57VP3)
Pfam (PF00163)
Pfam (PF01479)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S4
8H
(A7)
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEINpolymer31834727.81UniProt (Q383E1)
Pfam (PF00400)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN TRACK1
9I
(A8)
RIBOSOMAL PROTEIN S29, PUTATIVEpolymer576679.81TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS14
10J
(A9)
UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVEpolymer15316936.71UniProt (Q57WI3)
Pfam (PF00240)
Pfam (PF01599)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS31E
11K
(AC)
40S RIBOSOMAL PROTEIN SA, PUTATIVEpolymer27731396.01UniProt (Q383I8)
Pfam (PF00318)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S2
12L
(AD)
40S RIBOSOMAL PROTEIN S10, PUTATIVEpolymer17219322.81UniProt (Q38B66)
Pfam (PF03501)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S10E
13M
(AE)
40S RIBOSOMAL PROTEINS S11, PUTATIVEpolymer17420132.51UniProt (Q38CI4)
Pfam (PF16205)
Pfam (PF00366)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S17
14N
(AF)
40S RIBOSOMAL PROTEIN S12polymer14415889.21UniProt (Q385Y8)
Pfam (PF01248)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S12E
15O
(AG)
40S RIBOSOMAL PROTEIN S13, PUTATIVEpolymer15117347.61UniProt (Q586C2)
Pfam (PF08069)
Pfam (PF00312)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S15
16P
(AH)
40S RIBOSOMAL PROTEIN S14polymer14415540.91UniProt (Q4FKG9)
Pfam (PF00411)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN S11
17Q
(AI)
40S RIBOSOMAL PROTEIN S15, PUTATIVEpolymer15217512.41UniProt (Q57XN7)
Pfam (PF00203)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS19
18R
(AJ)
40S RIBOSOMAL PROTEIN S15A, PUTATIVEpolymer13014669.31UniProt (Q580K6)
Pfam (PF00410)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS8
19S
(AK)
40S RIBOSOMAL PROTEIN S16, PUTATIVEpolymer14917032.01UniProt (Q57VV0)
Pfam (PF00380)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS9
20T
(AL)
40S RIBOSOMAL PROTEIN S17, PUTATIVEpolymer14216259.21UniProt (Q382Z8)
Pfam (PF00833)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS17E
21U
(AM)
40S RIBOSOMAL PROTEIN S18, PUTATIVEpolymer15317548.51UniProt (Q38B69)
Pfam (PF00416)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS13
22V
(AO)
RIBOSOMAL PROTEIN S19, PUTATIVEpolymer16718891.51UniProt (Q583K7)
Pfam (PF01090)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS19E
23W
(AP)
40S RIBOSOMAL PROTEIN S2, PUTATIVEpolymer26628688.11UniProt (Q388D3)
Pfam (PF00333)
Pfam (PF03719)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS5
24X
(AQ)
RIBOSOMAL PROTEIN S20, PUTATIVEpolymer11713248.51TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS10
25Y
(AR)
40S RIBOSOMAL PROTEIN S21, PUTATIVEpolymer19421156.71UniProt (Q385B8)
Pfam (PF01249)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS21E
26Z
(AS)
40S RIBOSOMAL PROTEIN S23, PUTATIVEpolymer14315963.71UniProt (Q38CD1)
Pfam (PF00164)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS12
27AA
(AT)
40S RIBOSOMAL PROTEIN S24polymer13715722.81UniProt (Q38AM9)
Pfam (PF01282)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS24E
28BA
(AU)
40S RIBOSOMAL PROTEIN S25, PUTATIVEpolymer11312589.11UniProt (Q57XX0)
Pfam (PF03297)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS25E
29CA
(AV)
RIBOSOMAL PROTEIN S26, PUTATIVEpolymer11112837.21UniProt (Q384J9)
Pfam (PF01283)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS26E
30DA
(AW)
40S RIBOSOMAL PROTEIN S27, PUTATIVEpolymer869648.31UniProt (Q383V7)
Pfam (PF01667)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS27E
31EA
(AX)
40S RIBOSOMAL PROTEIN S3, PUTATIVEpolymer21424259.41UniProt (Q389I7)
Pfam (PF07650)
Pfam (PF00189)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS3
32FA
(AY)
40S RIBOSOMAL PROTEIN S30, PUTATIVEpolymer667454.91UniProt (Q584U5)
Pfam (PF04758)
TRYPANOSOMA BRUCEI BRUCEIRIBOSOMAL PROTEIN RPS30E
33GA
(AZ)
40S RIBOSOMAL PROTEIN S33, PUTATIVEpolymer10311186.91UniProt (Q57U30)
Pfam (PF01200)
TRYPANOSOMA BRUCEI BRUCEI
34HA
(BA)
ALPHA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNApolymer1847595796.41GenBank (X14553)TRYPANOSOMA BRUCEI
35IA
(BB)
BETA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNApolymer1465471450.11GenBank (X14553)TRYPANOSOMA BRUCEI
36JA
(BC)
5.8S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITpolymer16954224.11TRYPANOSOMA BRUCEI
37KA
(BD)
5S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITpolymer11938316.71TRYPANOSOMA BRUCEI
38LA
(BE)
SHORT RRNA-I OF THE LARGE RIBOSOMAL SUBUNITpolymer21067234.61TRYPANOSOMA BRUCEI
39MA
(BF)
SHORT RRNA-II OF THE LARGE RIBOSOMAL SUBUNITpolymer7323079.61TRYPANOSOMA BRUCEI
40NA
(BG)
SHORT RRNA-III OF THE LARGE RIBOSOMAL SUBUNITpolymer18258889.91TRYPANOSOMA BRUCEI
41OA
(BH)
SHORT RRNA-IV OF THE LARGE RIBOSOMAL SUBUNITpolymer13543388.61TRYPANOSOMA BRUCEI
42PA
(BI)
60S RIBOSOMAL PROTEIN L18polymer19321929.21UniProt (P50885)
Pfam (PF17135)
TRYPANOSOMA BRUCEI BRUCEI
43QA
(BJ)
RIBOSOMAL PROTEINpolymer21424640.21UniProt (Q383V8)
Pfam (PF00687)
TRYPANOSOMA BRUCEI BRUCEI
44RA
(BK)
60S RIBOSOMAL PROTEIN L10, PUTATIVEpolymer21324785.31UniProt (Q38EC5)
Pfam (PF00252)
TRYPANOSOMA BRUCEI BRUCEI
45SA
(BL)
60S RIBOSOMAL PROTEIN L11, PUTATIVEpolymer19422420.41UniProt (Q38EI9)
Pfam (PF00281)
Pfam (PF00673)
TRYPANOSOMA BRUCEI BRUCEI
46TA
(BM)
60S RIBOSOMAL PROTEIN L12, PUTATIVEpolymer16417594.71UniProt (Q57YK4)
Pfam (PF03946)
Pfam (PF00298)
TRYPANOSOMA BRUCEI BRUCEI
47UA
(BN)
60S RIBOSOMAL PROTEIN L13polymer21825492.01UniProt (Q57V54)
Pfam (PF01294)
TRYPANOSOMA BRUCEI BRUCEI
48VA
(BO)
60S RIBOSOMAL PROTEIN L13A, PUTATIVEpolymer22225775.81UniProt (Q585J5)
Pfam (PF00572)
TRYPANOSOMA BRUCEI BRUCEI
49WA
(BP)
PROBABLE 60S RIBOSOMAL PROTEIN L14polymer18921742.81UniProt (P55842)
Pfam (PF00467)
Pfam (PF01929)
TRYPANOSOMA BRUCEI BRUCEI
50XA
(BQ)
RIBOSOMAL PROTEIN L15polymer22126461.01UniProt (Q38CY7)
Pfam (PF00827)
TRYPANOSOMA BRUCEI BRUCEI
51YA
(BR)
60S RIBOSOMAL PROTEIN L17, PUTATIVEpolymer16619147.71UniProt (Q385T6)
Pfam (PF00237)
TRYPANOSOMA BRUCEI BRUCEI
52ZA
(BS)
60S RIBOSOMAL PROTEIN L18Apolymer17920950.51UniProt (Q382C4)
Pfam (PF01775)
TRYPANOSOMA BRUCEI BRUCEI
53AB
(BT)
60S RIBOSOMAL PROTEIN L19, PUTATIVEpolymer26029494.11UniProt (Q57ZI7)
Pfam (PF01280)
TRYPANOSOMA BRUCEI BRUCEI
54BB
(BU)
60S RIBOSOMAL PROTEIN L21E, PUTATIVEpolymer15918043.31UniProt (Q4FKD4)
Pfam (PF01157)
TRYPANOSOMA BRUCEI BRUCEI
55CB
(BV)
60S RIBOSOMAL PROTEIN L22, PUTATIVEpolymer13015288.91UniProt (Q383R3)
Pfam (PF01776)
TRYPANOSOMA BRUCEI BRUCEI
56DB
(BW)
60S RIBOSOMAL PROTEIN L23, PUTATIVEpolymer13914989.71UniProt (Q38DP2)
Pfam (PF00238)
TRYPANOSOMA BRUCEI BRUCEI
57EB
(BX)
60S RIBOSOMAL PROTEIN L23Apolymer16418211.61UniProt (Q57ZH2)
Pfam (PF00276)
TRYPANOSOMA BRUCEI BRUCEI
58FB
(BY)
60S RIBOSOMAL PROTEIN L24, PUTATIVEpolymer12514633.31UniProt (Q38B56)
Pfam (PF01246)
TRYPANOSOMA BRUCEI BRUCEI
59GB
(BZ)
60S RIBOSOMAL PROTEIN L26, PUTATIVEpolymer14316497.51UniProt (Q38D25)
Pfam (PF16906)
Pfam (PF00467)
TRYPANOSOMA BRUCEI BRUCEI
60HB
(Ba)
60S RIBOSOMAL PROTEIN L27, PUTATIVEpolymer13315618.51UniProt (Q381J6)
Pfam (PF00467)
Pfam (PF01777)
TRYPANOSOMA BRUCEI BRUCEI
61IB
(Bb)
60S RIBOSOMAL PROTEIN L27Apolymer14516307.21UniProt (Q38DN9)
Pfam (PF00828)
TRYPANOSOMA BRUCEI BRUCEI
62JB
(Bc)
60S RIBOSOMAL PROTEIN L28, PUTATIVEpolymer14616901.01UniProt (Q385E9)
Pfam (PF01778)
TRYPANOSOMA BRUCEI BRUCEI
63KB
(Bd)
60S RIBOSOMAL PROTEIN L29, PUTATIVEpolymer718244.61UniProt (Q383S6)
Pfam (PF01779)
TRYPANOSOMA BRUCEI BRUCEI
64LB
(Be)
60S RIBOSOMAL PROTEIN L2, PUTATIVEpolymer26028372.11UniProt (Q57W56)
Pfam (PF00181)
Pfam (PF03947)
TRYPANOSOMA BRUCEI BRUCEI
65MB
(Bf)
RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVEpolymer42948803.01UniProt (Q581Q1)
Pfam (PF00297)
TRYPANOSOMA BRUCEI BRUCEI
66NB
(Bg)
60S RIBOSOMAL PROTEIN L30polymer10511531.41UniProt (Q38BI9)
Pfam (PF01248)
TRYPANOSOMA BRUCEI BRUCEI
67OB
(Bh)
60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVEpolymer18821752.91UniProt (Q38DH8)
Pfam (PF01198)
TRYPANOSOMA BRUCEI BRUCEI
68PB
(Bi)
60S RIBOSOMAL PROTEIN L32, PUTATIVEpolymer13215432.21UniProt (Q38CL1)
Pfam (PF01655)
TRYPANOSOMA BRUCEI BRUCEI
69QB
(Bj)
60S RIBOSOMAL PROTEIN L34, PUTATIVEpolymer17019396.31UniProt (Q383V6)
Pfam (PF01199)
TRYPANOSOMA BRUCEI BRUCEI
70RB
(Bk)
60S RIBOSOMAL PROTEIN L35, PUTATIVEpolymer12715187.31UniProt (Q38FW8)
Pfam (PF00831)
TRYPANOSOMA BRUCEI BRUCEI
71SB
(Bl)
60S RIBOSOMAL PROTEIN L35A, PUTATIVEpolymer14917061.01UniProt (Q584G9)
Pfam (PF01247)
TRYPANOSOMA BRUCEI BRUCEI
72TB
(Bm)
RIBOSOMAL PROTEIN L36, PUTATIVEpolymer10912492.01UniProt (Q38CY6)
Pfam (PF01158)
TRYPANOSOMA BRUCEI BRUCEI
73UB
(Bn)
RIBOSOMAL PROTEIN L37polymer8410128.91UniProt (Q386L1)
Pfam (PF01907)
TRYPANOSOMA BRUCEI BRUCEI
74VB
(Bo)
60S RIBOSOMAL PROTEIN L37A, PUTATIVEpolymer9310482.31UniProt (Q38AW9)
Pfam (PF01780)
TRYPANOSOMA BRUCEI BRUCEI
75WB
(Bp)
60S RIBOSOMAL PROTEIN L38, PUTATIVEpolymer829527.41UniProt (Q38FV6)
Pfam (PF01781)
TRYPANOSOMA BRUCEI BRUCEI
76XB
(Bq)
60S RIBOSOMAL PROTEIN L39, PUTATIVEpolymer516568.01UniProt (Q57UJ8)
Pfam (PF00832)
TRYPANOSOMA BRUCEI BRUCEI
77YB
(Br)
60S RIBOSOMAL PROTEIN L4polymer37441941.21UniProt (Q582N2)
Pfam (PF00573)
Pfam (PF14374)
TRYPANOSOMA BRUCEI BRUCEI
78ZB
(Bs)
UBIQUITIN-60S RIBOSOMAL PROTEIN L40polymer12814685.31UniProt (P21899)
Pfam (PF00240)
Pfam (PF01020)
TRYPANOSOMA BRUCEI BRUCEI
79AC
(Bt)
60S RIBOSOMAL PROTEIN L44polymer10612488.81UniProt (D7SG81)
Pfam (PF00935)
TRYPANOSOMA BRUCEI BRUCEI
80BC
(Bu)
60S RIBOSOMAL PROTEIN L5, PUTATIVEpolymer30834710.21UniProt (Q38CY8)
Pfam (PF17144)
Pfam (PF14204)
TRYPANOSOMA BRUCEI BRUCEI
81CC
(Bv)
60S RIBOSOMAL PROTEIN L6, PUTATIVEpolymer19221232.01UniProt (Q389K1)
Pfam (PF01159)
TRYPANOSOMA BRUCEI BRUCEI
82DC
(Bw)
60S RIBOSOMAL PROTEIN L7, PUTATIVEpolymer25729416.71UniProt (Q57V35)
Pfam (PF08079)
Pfam (PF00327)
TRYPANOSOMA BRUCEI BRUCEI
83EC
(Bx)
60S RIBOSOMAL PROTEIN L7A, PUTATIVEpolymer27630945.61UniProt (Q57VM1)
Pfam (PF01248)
TRYPANOSOMA BRUCEI BRUCEI
84FC
(By)
60S RIBOSOMAL PROTEIN L9, PUTATIVEpolymer18921897.41UniProt (Q38CD0)
Pfam (PF00347)
TRYPANOSOMA BRUCEI BRUCEI
85GC
(AA)
18S RRNA OF THE SMALL RIBOSOMAL SUBUNITpolymer2251724377.11GenBank (M12676)TRYPANOSOMA BRUCEI
86HC
(AB)
E-SITE TRNApolymer7323546.01TRYPANOSOMA BRUCEI
Sequence modifications
BA: 1 - 1847 (GenBank: X14553)
PDBExternal DatabaseDetails
-C 549deletion
-U 550deletion
-U 551deletion
-C 552deletion
-C 553deletion
-G 554deletion
-G 555deletion
-C 566deletion
-C 567deletion
-G 568deletion
-G 569deletion
-U 570deletion
-G 571deletion
-G 572deletion
-G 573deletion
A 799-insertion
BB: 253 - 1548 (GenBank: X14553)
PDBExternal DatabaseDetails
G 484-insertion
U 485-insertion
G 486-insertion
A 487-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3603269.4
All*Total formula weight3603269.4
*Water molecules are not included.

246704

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