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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V85

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S rRNApolymer1533496892.41GenBank (323376397)
2AB30S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
3AC30S ribosomal protein S3polymer23326031.31UniProt (C3SQX2)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
4AD30S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
5AE30S ribosomal protein S5polymer16717629.41UniProt (C3SR27)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
6AF30S ribosomal protein S6 1polymer13115211.11UniProt (C3SFQ7)
Pfam (PF01250)
UniProt (by SIFTS) (P02358)
In PDB		Escherichia coli
7AG30S ribosomal protein S7polymer15617637.41UniProt (C3SQS2)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
8AH30S ribosomal protein S8polymer13014146.61UniProt (C3SR12)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
9AI30S ribosomal protein S9polymer13014886.31UniProt (C3SRY2)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
10AJ30S ribosomal protein S10polymer10311755.61UniProt (C3SQT7)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
11AK30S ribosomal protein S11polymer12913871.01UniProt (C3SR57)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
12AL30S ribosomal protein S12 1polymer12413768.21UniProt (C3SQR7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
13AM30S ribosomal protein S13polymer11813128.51UniProt (C3SR52)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
14AN30S ribosomal protein S14polymer10111606.61UniProt (C3SR07)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
15AO30S ribosomal protein S15 1polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
16AP30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
17AQ30S ribosomal protein S17polymer849724.51UniProt (C3SQY7)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
18AR30S ribosomal protein S18polymer759005.51UniProt (C3SFP7)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
19AS30S ribosomal protein S19polymer9210455.41UniProt (C3SQW2)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
20AT30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
21AU30S ribosomal protein S21polymer718524.01UniProt (C3STZ7)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
22AVmessenger RNApolymer278862.51
23AWPeptide chain release factor 3polymer52959651.91UniProt (P0A7I4)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF16658)
In PDB		Escherichia coliRF-3
24AYViomycinpolymer6703.71NOR (NOR00633)
BIRD (PRD_000226)		Streptomyces
25B050S ribosomal protein L27polymer859146.51UniProt (C3SSG7)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli
26B150S ribosomal protein L28polymer789027.61UniProt (C3SME2)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
27B250S ribosomal protein L29polymer637286.51UniProt (C3SQY2)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli50S ribosomal subunit protein L29
28B350S ribosomal protein L30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
29B450S ribosomal protein L32polymer576463.41UniProt (C3TE02)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
30B550S ribosomal protein L33polymer556388.61UniProt (C3SME7)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
31B650S ribosomal protein L34polymer465397.51UniProt (C3SLL2)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
32B750S ribosomal protein L35polymer657313.01UniProt (C3T7Q2)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
33B850S ribosomal protein L36 1polymer384377.41UniProt (C3SR47)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
34BA23S rRNApolymer2903941306.21GenBank (315134697)Escherichia coli
35BB5S ribosomal RNApolymer11838177.81GenBank (323376397)Escherichia coli
36BC50S ribosomal protein L2polymer27329923.61UniProt (C3SQV7)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli
37BD50S ribosomal protein L3polymer20922277.51UniProt (C3SQU2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
38BE50S ribosomal protein L4polymer20122121.61UniProt (C3SQU7)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
39BF50S ribosomal protein L5polymer17920333.61UniProt (C3SR02)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
40BG50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
41BH50S ribosomal protein L10polymer16517736.61UniProt (C3SIB7)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
42BI50S ribosomal protein L11polymer14214894.41UniProt (C3SIC7)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
43BJ, BK, BL, BM50S ribosomal protein L7/L12polymer12112309.24UniProt (C3SIB2)
Pfam (PF16320)
Pfam (PF00542)
UniProt (by SIFTS) (P0A7K2)
In PDB		Escherichia coli
44BN50S ribosomal protein L13polymer14216050.61UniProt (C3SRX7)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
45BO50S ribosomal protein L14polymer12313565.11UniProt (C3SQZ2)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
46BP50S ribosomal protein L15polymer14415008.51UniProt (C3SR37)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
47BQ50S ribosomal protein L16polymer13615312.31UniProt (C3SQX7)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
48BR50S ribosomal protein L17polymer12714393.71UniProt (C3SR72)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
49BS50S ribosomal protein L18polymer11712794.71UniProt (C3SR22)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
50BT50S ribosomal protein L19polymer11513159.31UniProt (C3SYQ7)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
51BU50S ribosomal protein L20polymer11813528.01UniProt (C3T7Q7)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
52BV50S ribosomal protein L21polymer10311586.41UniProt (C3SSG2)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
53BW50S ribosomal protein L22polymer11613082.21UniProt (C3SQW7)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
54BX50S ribosomal protein L23polymer10011222.21UniProt (C3SQV2)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
55BY50S ribosomal protein L24 1polymer10411339.31UniProt (C3SQZ7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
56BZ50S ribosomal protein L25 1polymer9410713.51UniProt (C3T3H7)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
57AA, BA, BN, BO, BQ...MAGNESIUM IONnon-polymer24.3493Chemie (MG)
58AWPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
59waterwater18.017Chemie (HOH)
Sequence modifications
BP: 1 - 144 (UniProt: C3SR37)
PDBExternal DatabaseDetails
Ile 77Val 77SEE REMARK 999
BW: 1 - 110 (UniProt: C3SQW7)
PDBExternal DatabaseDetails
His 111-EXPRESSION TAG
His 112-EXPRESSION TAG
His 113-EXPRESSION TAG
His 114-EXPRESSION TAG
His 115-EXPRESSION TAG
His 116-EXPRESSION TAG
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2261645.9
Non-Polymers*Number of molecules494
Total formula weight12504.6
All*Total formula weight2274150.4
*Water molecules are not included.

224004

PDB entries from 2024-08-21

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