4V85
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S rRNA | polymer | 1533 | 496892.4 | 1 | GenBank (323376397) | ||
| 2 | B (AB) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) | Escherichia coli | |
| 3 | C (AC) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (C3SQX2) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) | Escherichia coli | |
| 4 | D (AD) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (C3SR62) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8) | Escherichia coli | |
| 5 | E (AE) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (C3SR27) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) | Escherichia coli | |
| 6 | F (AF) | 30S ribosomal protein S6 1 | polymer | 131 | 15211.1 | 1 | UniProt (C3SFQ7) Pfam (PF01250) UniProt (by SIFTS) (P02358) | Escherichia coli | |
| 7 | G (AG) | 30S ribosomal protein S7 | polymer | 156 | 17637.4 | 1 | UniProt (C3SQS2) Pfam (PF00177) UniProt (by SIFTS) (P02359) | Escherichia coli | |
| 8 | H (AH) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) | Escherichia coli | |
| 9 | I (AI) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) | Escherichia coli | |
| 10 | J (AJ) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) | Escherichia coli | |
| 11 | K (AK) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (C3SR57) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) | Escherichia coli | |
| 12 | L (AL) | 30S ribosomal protein S12 1 | polymer | 124 | 13768.2 | 1 | UniProt (C3SQR7) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) | Escherichia coli | |
| 13 | M (AM) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (C3SR52) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) | Escherichia coli | |
| 14 | N (AN) | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (C3SR07) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) | Escherichia coli | |
| 15 | O (AO) | 30S ribosomal protein S15 1 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) | Escherichia coli | |
| 16 | P (AP) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) | Escherichia coli | |
| 17 | Q (AQ) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) | Escherichia coli | |
| 18 | R (AR) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (C3SFP7) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) | Escherichia coli | |
| 19 | S (AS) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) | Escherichia coli | |
| 20 | T (AT) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli | |
| 21 | U (AU) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (C3STZ7) Pfam (PF01165) UniProt (by SIFTS) (P68679) | Escherichia coli | |
| 22 | V (AV) | messenger RNA | polymer | 27 | 8862.5 | 1 | |||
| 23 | W (AW) | Peptide chain release factor 3 | polymer | 529 | 59651.9 | 1 | UniProt (P0A7I4) Pfam (PF00009) Pfam (PF03144) Pfam (PF16658) | Escherichia coli | RF-3 |
| 24 | X (AY) | Viomycin | polymer | 6 | 703.7 | 1 | NOR (NOR00633) BIRD (PRD_000226) | Streptomyces | |
| 25 | Y (B0) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (C3SSG7) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8) | Escherichia coli | |
| 26 | Z (B1) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (C3SME2) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) | Escherichia coli | |
| 27 | AA (B2) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (C3SQY2) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) | Escherichia coli | 50S ribosomal subunit protein L29 |
| 28 | BA (B3) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) | Escherichia coli | |
| 29 | CA (B4) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (C3TE02) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) | Escherichia coli | |
| 30 | DA (B5) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) | Escherichia coli | |
| 31 | EA (B6) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (C3SLL2) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) | Escherichia coli | |
| 32 | FA (B7) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (C3T7Q2) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) | Escherichia coli | |
| 33 | GA (B8) | 50S ribosomal protein L36 1 | polymer | 38 | 4377.4 | 1 | UniProt (C3SR47) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) | Escherichia coli | |
| 34 | HA (BA) | 23S rRNA | polymer | 2903 | 941306.2 | 1 | GenBank (315134697) | Escherichia coli | |
| 35 | IA (BB) | 5S ribosomal RNA | polymer | 118 | 38177.8 | 1 | GenBank (323376397) | Escherichia coli | |
| 36 | JA (BC) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (C3SQV7) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) | Escherichia coli | |
| 37 | KA (BD) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (C3SQU2) Pfam (PF00297) UniProt (by SIFTS) (P60438) | Escherichia coli | |
| 38 | LA (BE) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (C3SQU7) Pfam (PF00573) UniProt (by SIFTS) (P60723) | Escherichia coli | |
| 39 | MA (BF) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (C3SR02) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) | Escherichia coli | |
| 40 | NA (BG) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (C3SR17) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) | Escherichia coli | |
| 41 | OA (BH) | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (C3SIB7) Pfam (PF00466) UniProt (by SIFTS) (P0A7J3) | Escherichia coli | |
| 42 | PA (BI) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (C3SIC7) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0A7J7) | Escherichia coli | |
| 43 | QA, RA, SA, TA (BJ, BK, BL, BM) | 50S ribosomal protein L7/L12 | polymer | 121 | 12309.2 | 4 | UniProt (C3SIB2) Pfam (PF16320) Pfam (PF00542) UniProt (by SIFTS) (P0A7K2) | Escherichia coli | |
| 44 | UA (BN) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (C3SRX7) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) | Escherichia coli | |
| 45 | VA (BO) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (C3SQZ2) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) | Escherichia coli | |
| 46 | WA (BP) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (C3SR37) Pfam (PF00828) UniProt (by SIFTS) (P02413) | Escherichia coli | |
| 47 | XA (BQ) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (C3SQX7) Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) | Escherichia coli | |
| 48 | YA (BR) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (C3SR72) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) | Escherichia coli | |
| 49 | ZA (BS) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (C3SR22) Pfam (PF00861) UniProt (by SIFTS) (P0C018) | Escherichia coli | |
| 50 | AB (BT) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (C3SYQ7) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) | Escherichia coli | |
| 51 | BB (BU) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (C3T7Q7) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) | Escherichia coli | |
| 52 | CB (BV) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) | Escherichia coli | |
| 53 | DB (BW) | 50S ribosomal protein L22 | polymer | 116 | 13082.2 | 1 | UniProt (C3SQW7) Pfam (PF00237) UniProt (by SIFTS) (P61175) | Escherichia coli | |
| 54 | EB (BX) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (C3SQV2) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) | Escherichia coli | |
| 55 | FB (BY) | 50S ribosomal protein L24 1 | polymer | 104 | 11339.3 | 1 | UniProt (C3SQZ7) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) | Escherichia coli | |
| 56 | GB (BZ) | 50S ribosomal protein L25 1 | polymer | 94 | 10713.5 | 1 | UniProt (C3T3H7) Pfam (PF01386) UniProt (by SIFTS) (P68919) | Escherichia coli | |
| 57 | AC, AD, AE, AF, AG... (AA, BA, BN, BO, BQ...) | MAGNESIUM ION | non-polymer | 24.3 | 493 | Chemie (MG) | |||
| 58 | LF (AW) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
| 59 | HU, IU, JU, KU, LU... (AW, B8, BA, BC, BD...) | water | water | 18.0 | 17 | Chemie (HOH) |
Sequence modifications
BP: 1 - 144 (UniProt: C3SR37)
BW: 1 - 110 (UniProt: C3SQW7)
| PDB | External Database | Details |
|---|---|---|
| Ile 77 | Val 77 | SEE REMARK 999 |
| PDB | External Database | Details |
|---|---|---|
| His 111 | - | expression tag |
| His 112 | - | expression tag |
| His 113 | - | expression tag |
| His 114 | - | expression tag |
| His 115 | - | expression tag |
| His 116 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2261645.9 | |
| Non-Polymers* | Number of molecules | 494 |
| Total formula weight | 12504.6 | |
| All* | Total formula weight | 2274150.4 |
