4V83

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, BB (AA, CA)	ribosomal RNA 16S	polymer	1506	489042.6	2	GenBank (AE017221.1)	Thermus thermophilus
2	B, CB (AB, CB)	30S ribosomal protein S2	polymer	234	26987.3	2	UniProt (P62662) Pfam (PF00318)	Thermus thermophilus
3	C, DB (AC, CC)	30S ribosomal protein S3	polymer	206	22862.4	2	UniProt (P62663) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus
4	D, EB (AD, CD)	30S ribosomal protein S4	polymer	208	24242.3	2	UniProt (P62664) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus
5	E, FB (AE, CE)	30S ribosomal protein S5	polymer	151	16460.2	2	UniProt (P62665) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus
6	F, GB (AF, CF)	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (P62666) Pfam (PF01250)	Thermus thermophilus
7	G, HB (AG, CG)	30S ribosomal protein S7	polymer	155	17919.8	2	UniProt (P62667) Pfam (PF00177)	Thermus thermophilus
8	H, IB (AH, CH)	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (P62668) Pfam (PF00410)	Thermus thermophilus
9	I, JB (AI, CI)	30S ribosomal protein S9	polymer	127	14298.5	2	UniProt (P62669) Pfam (PF00380)	Thermus thermophilus
10	J, KB (AJ, CJ)	30S ribosomal protein S10	polymer	98	11299.2	2	UniProt (P62653) Pfam (PF00338)	Thermus thermophilus
11	K, LB (AK, CK)	30S ribosomal protein S11	polymer	119	12606.4	2	UniProt (P62654) Pfam (PF00411)	Thermus thermophilus
12	L, MB (AL, CL)	30S ribosomal protein S12	polymer	124	13804.3	2	UniProt (P61941) Pfam (PF00164)	Thermus thermophilus
13	M, NB (AM, CM)	30S ribosomal protein S13	polymer	116	13237.4	2	UniProt (P62655) Pfam (PF00416)	Thermus thermophilus
14	N, OB (AN, CN)	30S ribosomal protein S14 type Z	polymer	60	7027.5	2	UniProt (P62656) Pfam (PF00253)	Thermus thermophilus
15	O, PB (AO, CO)	30S ribosomal protein S15	polymer	88	10447.2	2	UniProt (P62657) Pfam (PF00312)	Thermus thermophilus
16	P, QB (AP, CP)	30S ribosomal protein S16	polymer	83	9924.5	2	UniProt (P62238) Pfam (PF00886)	Thermus thermophilus
17	Q, RB (AQ, CQ)	30S ribosomal protein S17	polymer	99	11721.9	2	UniProt (P62658) Pfam (PF00366)	Thermus thermophilus
18	R, SB (AR, CR)	30S ribosomal protein S18	polymer	70	8155.8	2	UniProt (P62659) Pfam (PF01084)	Thermus thermophilus
19	S, TB (AS, CS)	30S ribosomal protein S19	polymer	78	8949.4	2	UniProt (P62660) Pfam (PF00203)	Thermus thermophilus
20	T, UB (AT, CT)	30S ribosomal protein S20	polymer	99	10907.1	2	UniProt (P62661) Pfam (PF01649)	Thermus thermophilus
21	U, VB (AU, CU)	30S ribosomal protein Thx	polymer	24	2960.5	2	UniProt (P62613) Pfam (PF17070)	Thermus thermophilus
22	V, WB (AV, CV)	domain 3 of PSIC IGR IRES RNA	polymer	35	11183.6	2		Thermus thermophilus
23	W, XB (BA, DA)	23S ribosomal RNA	polymer	2879	936302.1	2	GenBank (AE017221.1)	Thermus thermophilus
24	X, YB (BB, DB)	5S ribosomal RNA	polymer	119	38553.0	2	GenBank (AE017221.1)	Thermus thermophilus
25	Y, ZB (BC, DC)	50S ribosomal protein L2	polymer	271	29828.6	2	UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus
26	AC, Z (BD, DD)	50S ribosomal protein L3	polymer	204	22250.0	2	UniProt (Q72I04) Pfam (PF00297)	Thermus thermophilus
27	AA, BC (BE, DE)	50S ribosomal protein L4	polymer	202	22487.0	2	UniProt (Q72I05) Pfam (PF00573)	Thermus thermophilus
28	BA, CC (BF, DF)	50S ribosomal protein L5	polymer	181	20944.4	2	UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus
29	CA, DC (BG, DG)	50S ribosomal protein L6	polymer	159	17363.1	2	UniProt (Q72I19) Pfam (PF00347)	Thermus thermophilus
30	DA, EC (BH, DH)	50S ribosomal protein L9	polymer	145	16107.9	2	UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948)	Thermus thermophilus
31	EA, FC (BI, DI)	50S ribosomal protein L10	polymer	65	7330.5	2	UniProt (Q72GS1) Pfam (PF00466)	Thermus thermophilus
32	FA, GC (BJ, DJ)	50S ribosomal protein L13	polymer	137	15568.5	2	UniProt (Q72IN1) Pfam (PF00572)	Thermus thermophilus
33	GA, HC (BK, DK)	50S ribosomal protein L14	polymer	122	13309.6	2	UniProt (Q72I14) Pfam (PF00238)	Thermus thermophilus
34	HA, IC (BL, DL)	50S ribosomal protein L15	polymer	146	15858.5	2	UniProt (Q72I23) Pfam (PF00828)	Thermus thermophilus
35	IA, JC (BM, DM)	50S ribosomal protein L16	polymer	136	15348.0	2	UniProt (Q72I11) Pfam (PF00252)	Thermus thermophilus
36	JA, KC (BN, DN)	50S ribosomal protein L17	polymer	117	13619.0	2	UniProt (Q72I33) Pfam (PF01196)	Thermus thermophilus
37	KA, LC (BO, DO)	50S ribosomal protein L18	polymer	98	10941.9	2	UniProt (Q72I20) Pfam (PF00861)	Thermus thermophilus
38	LA, MC (BP, DP)	50S ribosomal protein L19	polymer	137	16247.9	2	UniProt (Q72JU9) Pfam (PF01245)	Thermus thermophilus
39	MA, NC (BQ, DQ)	50S ribosomal protein L20	polymer	116	13500.9	2	UniProt (Q72L76) Pfam (PF00453)	Thermus thermophilus
40	NA, OC (BR, DR)	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (Q72HR2) Pfam (PF00829)	Thermus thermophilus
41	OA, PC (BS, DS)	50S ribosomal protein L22	polymer	112	12678.9	2	UniProt (Q72I09) Pfam (PF00237)	Thermus thermophilus
42	PA, QC (BT, DT)	50S ribosomal protein L23	polymer	92	10273.1	2	UniProt (Q72I06) Pfam (PF00276)	Thermus thermophilus
43	QA, RC (BU, DU)	50S ribosomal protein L24	polymer	100	11078.5	2	UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136)	Thermus thermophilus
44	RA, SC (BV, DV)	50S ribosomal protein L25	polymer	188	21150.3	2	UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus	General stress protein CTC
45	SA, TC (BW, DW)	50S ribosomal protein L27	polymer	76	8587.9	2	UniProt (Q72HR3) Pfam (PF01016)	Thermus thermophilus
46	TA, UC (BX, DX)	50S ribosomal protein L28	polymer	88	9884.7	2	UniProt (Q72G84) Pfam (PF00830)	Thermus thermophilus
47	UA, VC (BY, DY)	50S ribosomal protein L29	polymer	62	7457.9	2	UniProt (Q72I12) Pfam (PF00831)	Thermus thermophilus
48	VA, WC (BZ, DZ)	50S ribosomal protein L30	polymer	59	6670.0	2	UniProt (Q72I22) Pfam (PF00327)	Thermus thermophilus
49	WA, XC (B1, D1)	50S ribosomal protein L31	polymer	30	3278.9	2	UniProt (Q72JR0) Pfam (PF01197)	Thermus thermophilus
50	XA, YC (B2, D2)	50S ribosomal protein L32	polymer	52	5818.9	2	UniProt (P62652) Pfam (PF01783)	Thermus thermophilus
51	YA, ZC (B3, D3)	50S ribosomal protein L33	polymer	44	5473.4	2	UniProt (Q72GW3) Pfam (PF00471)	Thermus thermophilus
52	AD, ZA (B4, D4)	50S ribosomal protein L34	polymer	48	5975.3	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus
53	AB, BD (B5, D5)	50S ribosomal protein L35	polymer	63	7245.9	2	UniProt (Q72L77) Pfam (PF01632)	Thermus thermophilus
54	AAA, AAB, AAC, AAD, ABA... (BA, CA, DA, DK, D2...)	MAGNESIUM ION	non-polymer		24.3	2657	Chemie (MG)
55	AO, TLB, TO, WKB (AD, CN, AN, CD)	ZINC ION	non-polymer		65.4	4	Chemie (ZN)

Sequence modifications

BA, DA: 6 - 2897 (GenBank: AE017221.1)

PDB	External Database	Details
U 1142	C 1535654	SEE REMARK 999
U 2825	G 1537301	SEE REMARK 999

BQ, DQ: 2 - 118 (UniProt: Q72L76)

PDB	External Database	Details
-	Phe 32	deletion

Contents of the asymmetric unit

Polymers	Number of chains	106
	Total formula weight	4248197.7
Non-Polymers*	Number of molecules	2661
	Total formula weight	64840.0
All*	Total formula weight	4313037.7

*Water molecules are not included.