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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V83

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CAribosomal RNA 16Spolymer1506489042.62GenBank (AE017221.1)Thermus thermophilus
2AB, CB30S ribosomal protein S2polymer23426987.32UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AC, CC30S ribosomal protein S3polymer20622862.42UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4AD, CD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5AE, CE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus
7AG, CG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus
8AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus
9AI, CI30S ribosomal protein S9polymer12714298.52UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus
10AJ, CJ30S ribosomal protein S10polymer9811299.22UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus
11AK, CK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus
12AL, CL30S ribosomal protein S12polymer12413804.32UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus
13AM, CM30S ribosomal protein S13polymer11613237.42UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus
14AN, CN30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus
15AO, CO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus
16AP, CP30S ribosomal protein S16polymer839924.52UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus
17AQ, CQ30S ribosomal protein S17polymer9911721.92UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus
18AR, CR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AS, CS30S ribosomal protein S19polymer788949.42UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus
20AT, CT30S ribosomal protein S20polymer9910907.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus
21AU, CU30S ribosomal protein Thxpolymer242960.52UniProt (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus
22AV, CVdomain 3 of PSIC IGR IRES RNApolymer3511183.62Thermus thermophilus
23BA, DA23S ribosomal RNApolymer2879936302.12GenBank (AE017221.1)Thermus thermophilus
24BB, DB5S ribosomal RNApolymer11938553.02GenBank (AE017221.1)Thermus thermophilus
25BC, DC50S ribosomal protein L2polymer27129828.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
26BD, DD50S ribosomal protein L3polymer20422250.02UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus
27BE, DE50S ribosomal protein L4polymer20222487.02UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus
28BF, DF50S ribosomal protein L5polymer18120944.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
29BG, DG50S ribosomal protein L6polymer15917363.12UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus
30BH, DH50S ribosomal protein L9polymer14516107.92UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
31BI, DI50S ribosomal protein L10polymer657330.52UniProt (Q72GS1)
Pfam (PF00466)
In PDB		Thermus thermophilus
32BJ, DJ50S ribosomal protein L13polymer13715568.52UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus
33BK, DK50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus
34BL, DL50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus
35BM, DM50S ribosomal protein L16polymer13615348.02UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus
36BN, DN50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus
37BO, DO50S ribosomal protein L18polymer9810941.92UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus
38BP, DP50S ribosomal protein L19polymer13716247.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus
39BQ, DQ50S ribosomal protein L20polymer11613500.92UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus
40BR, DR50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus
41BS, DS50S ribosomal protein L22polymer11212678.92UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus
42BT, DT50S ribosomal protein L23polymer9210273.12UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus
43BU, DU50S ribosomal protein L24polymer10011078.52UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
44BV, DV50S ribosomal protein L25polymer18821150.32UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusGeneral stress protein CTC
45BW, DW50S ribosomal protein L27polymer768587.92UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus
46BX, DX50S ribosomal protein L28polymer889884.72UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus
47BY, DY50S ribosomal protein L29polymer627457.92UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus
48BZ, DZ50S ribosomal protein L30polymer596670.02UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus
49B1, D150S ribosomal protein L31polymer303278.92UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus
50B2, D250S ribosomal protein L32polymer525818.92UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus
51B3, D350S ribosomal protein L33polymer445473.42UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus
52B4, D450S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
53B5, D550S ribosomal protein L35polymer637245.92UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus
54BA, CA, DA, DK, D2...MAGNESIUM IONnon-polymer24.32657Chemie (MG)
55AD, CN, AN, CDZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
BA, DA: 6 - 2897 (GenBank: AE017221.1)
PDBExternal DatabaseDetails
U 1142C 1535654SEE REMARK 999
U 2825G 1537301SEE REMARK 999
BQ, DQ: 2 - 118 (UniProt: Q72L76)
PDBExternal DatabaseDetails
-Phe 32DELETION
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains106
Total formula weight4248197.7
Non-Polymers*Number of molecules2661
Total formula weight64840.0
All*Total formula weight4313037.7
*Water molecules are not included.

226262

PDB entries from 2024-10-16

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