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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V7R

Yeast 80S ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A1, C118S ribosomal RNApolymer1800579761.92GenBank (Z75578)Saccharomyces cerevisiae (yeast)
2AA, CA40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiae (yeast)
3AB, CB40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiae (yeast)
4AC, CC40S ribosomal protein S3polymer24026542.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Saccharomyces cerevisiae (yeast)
5AD, CD40S ribosomal protein S5polymer22525072.62UniProt (P26783)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiae (yeast)
6AE, CE40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiae (yeast)
7AF, CF40S ribosomal protein S11polymer15617785.92UniProt (P26781)
In PDB		Saccharomyces cerevisiae (yeast)
8AG, CG40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiae (yeast)
9AH, CH40S ribosomal protein S14-Apolymer13714562.72UniProt (P06367)
Pfam (PF00411)
In PDB		Saccharomyces cerevisiae (yeast)
10AI, CI40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiae (yeast)
11AJ, CJ40S ribosomal protein S16polymer14315877.52UniProt (P40213)
In PDB		Saccharomyces cerevisiae (yeast)
12AK, CK40S ribosomal protein S17-Apolymer13615820.42UniProt (P02407)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiae (yeast)
13AL, CL40S ribosomal protein S18polymer14617071.62UniProt (P35271)
In PDB		Saccharomyces cerevisiae (yeast)
14AM, CM40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiae (yeast)
15AN, CN40S ribosomal protein S20polymer12113929.02UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiae (yeast)
16AO, CO40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiae (yeast)
17AP, CP40S ribosomal protein S23polymer14516073.92UniProt (P32827)
In PDB		Saccharomyces cerevisiae (yeast)
18AQ, CQ40S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiae (yeast)
19AR, CR40S ribosomal protein S28-Apolymer677605.82UniProt (Q3E7X9)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiae (yeast)
20AS, CS40S ribosomal protein S29-Apolymer566675.72UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiae (yeast)
21AT, CTGuanine nucleotide-binding protein subunit beta-like protein; RACK-1polymer31934841.22UniProt (P38011)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae (yeast)Receptor of activated protein kinase C 1, RACK1, Receptor for activated C kinase
22Aa, Bo, CaUnassigned secondary structurepolymer201720.13Saccharomyces cerevisiae (yeast)
23Ab, CbUnassigned secondary structurepolymer1058954.02Saccharomyces cerevisiae (yeast)
24Ac, CcUnassigned secondary structurepolymer937932.82Saccharomyces cerevisiae (yeast)
25Ad, CdUnassigned secondary structurepolymer352996.72Saccharomyces cerevisiae (yeast)
26Ae, Bj, DjUnassigned secondary structurepolymer211805.23Saccharomyces cerevisiae (yeast)
27AfUnassigned secondary structurepolymer11954.21Saccharomyces cerevisiae (yeast)
28Ah, ChUnassigned secondary structurepolymer413507.32Saccharomyces cerevisiae (yeast)
29B1, D125S ribosomal RNApolymer33961097493.92GenBank (BK006945.1)Saccharomyces cerevisiae S288c (yeast)
30B2, D25S ribosomal RNApolymer12138951.12GenBank (J01360.1)
GenBank (AE016820.4)		Saccharomyces cerevisiae (yeast)
31B3, D35.8S ribosomal RNApolymer15850682.92GenBank (HQ026735.1)Saccharomyces cerevisiae (yeast)
32BA, DA60S ribosomal protein L1polymer21724524.82UniProt (P53030)
In PDB		Saccharomyces cerevisiae (yeast)L10a
33BB, DB60S ribosomal protein L2polymer25427463.62UniProt (P05736)
In PDB		Saccharomyces cerevisiae (yeast)L5, RP8, YL6
34BC, DC60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae (yeast)
35BD, DD60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae (yeast)
36BE, DE60S ribosomal protein L5polymer29733792.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae (yeast)
37BF, DF60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae (yeast)L17, RP18, YL16
38BG, DG60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae (yeast)L6, RP11, YL8
39BH, DH60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (yeast)L4, L4-2, L7a-1,
40BI, DI60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae (yeast)L8, RP24, YL11
41BJ, DJ60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiae (yeast)
42BK, DK60S ribosomal protein L11-Apolymer17419755.72UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae (yeast)L16, RP39, YL22
43BN, DN60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae (yeast)
44BO, DO60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae (yeast)L13, RP15R, YL10, YP18
45BP, DP60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae (yeast)L13a, L21, RP22, YL15
46BQ, DQ60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae (yeast)L20A, YL17
47BR, DR60S ribosomal protein L18polymer18620609.32UniProt (P07279)
In PDB		Saccharomyces cerevisiae (yeast)RP28
48BS, DS60S ribosomal protein L19polymer18921762.32UniProt (P05735)
In PDB		Saccharomyces cerevisiae (yeast)L23, RP15L, RP33, YL14
49BT, DT60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae (yeast)
50BU, DU60S ribosomal protein L23polymer13714494.02UniProt (P04451)
In PDB		Saccharomyces cerevisiae (yeast)L17a, YL32
51BV, DV60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae (yeast)L30, RP29, YL21
52BW, DW60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae (yeast)RP16L, YL25, YP42'
53BX, DX60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae (yeast)L33, YL33
54BY, DY60S ribosomal protein L28polymer14916762.72UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae (yeast)L27a, L29, RP44, RP62, YL24
55BZ, DZ60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (yeast)L32, RP73, YL38
56Ba, Da60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae (yeast)L34, YL28
57Bb, Db60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae (yeast)
58Bc, Dc60S ribosomal protein L35polymer12013942.62UniProt (P39741)
In PDB		Saccharomyces cerevisiae (yeast)
59Bd, Dd60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae (yeast)L43, YL35, YP55
60Be, De60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae (yeast)L46, YL40
61Bf, Df60S ribosomal protein L42polymer10612246.72UniProt (P02405)
In PDB		Saccharomyces cerevisiae (yeast)
62Bg, Dg60S ribosomal protein L43polymer9210113.02UniProt (P49631)
In PDB		Saccharomyces cerevisiae (yeast)L37a, YL35
63Bh, DhUnassigned secondary structurepolymer443762.62Saccharomyces cerevisiae (yeast)
64Bi, DiUnassigned secondary structurepolymer121039.32Saccharomyces cerevisiae (yeast)
65Bk, DkUnassigned secondary structurepolymer161379.72Saccharomyces cerevisiae (yeast)
66BlUnassigned secondary structurepolymer191635.01Saccharomyces cerevisiae (yeast)
67BmUnassigned secondary structurepolymer9784.01Saccharomyces cerevisiae (yeast)
68BnUnassigned secondary structurepolymer272315.81Saccharomyces cerevisiae (yeast)
69BpUnassigned secondary structurepolymer8698.91Saccharomyces cerevisiae (yeast)
70BqUnassigned secondary structurepolymer171464.81Saccharomyces cerevisiae (yeast)
71BrUnassigned secondary structurepolymer231975.41Saccharomyces cerevisiae (yeast)
72DL60S ribosomal protein L12polymer16517850.61UniProt (P17079)
In PDB		Saccharomyces cerevisiae (yeast)L15, YL23
73DM60S acidic ribosomal protein P0polymer31233798.21UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		Saccharomyces cerevisiae (yeast)A0, L10E
74D1, A1, D2, B1, B2...osmium (III) hexamminenon-polymer286.4715Chemie (OHX)
Sequence modifications
Aa, Bo, Ca: 2 - 21 (PDB: 4V7R)
Ab, Cb: 1 - 136 (PDB: 4V7R)
Ac, Cc: 1 - 98 (PDB: 4V7R)
Ad, Cd: 84 - 118 (PDB: 4V7R)
Ae, Bj, Dj: 1 - 21 (PDB: 4V7R)
Ah, Ch: 1 - 64 (PDB: 4V7R)
B2, D2: 1 - 121 (GenBank: J01360.1)
BE, DE: 1 - 297 (UniProt: P26321)
PDBExternal DatabaseDetails
Arg 112Lys 112conflict
BY, DY: 1 - 149 (UniProt: P02406)
PDBExternal DatabaseDetails
Glu 38Gln 38conflict
DM: 1 - 312 (UniProt: P05317)
PDBExternal DatabaseDetails
Tyr 83Asn 83conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains139
Total formula weight5646898.5
Non-Polymers*Number of molecules715
Total formula weight204751.0
All*Total formula weight5851649.5
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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