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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V7R

Yeast 80S ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, VB
(A1, C1)		18S ribosomal RNApolymer1800579761.92GenBank (Z75578)Saccharomyces cerevisiae (yeast)
2B, WB
(AA, CA)		40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)		Saccharomyces cerevisiae (yeast)
3C, XB
(AB, CB)		40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)		Saccharomyces cerevisiae (yeast)
4D, YB
(AC, CC)		40S ribosomal protein S3polymer24026542.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)		Saccharomyces cerevisiae (yeast)
5E, ZB
(AD, CD)		40S ribosomal protein S5polymer22525072.62UniProt (P26783)
Pfam (PF00177)		Saccharomyces cerevisiae (yeast)
6AC, F
(AE, CE)		40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiae (yeast)
7BC, G
(AF, CF)		40S ribosomal protein S11polymer15617785.92UniProt (P26781)Saccharomyces cerevisiae (yeast)
8CC, H
(AG, CG)		40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)		Saccharomyces cerevisiae (yeast)
9DC, I
(AH, CH)		40S ribosomal protein S14-Apolymer13714562.72UniProt (P06367)
Pfam (PF00411)		Saccharomyces cerevisiae (yeast)
10EC, J
(AI, CI)		40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)		Saccharomyces cerevisiae (yeast)
11FC, K
(AJ, CJ)		40S ribosomal protein S16polymer14315877.52UniProt (P40213)Saccharomyces cerevisiae (yeast)
12GC, L
(AK, CK)		40S ribosomal protein S17-Apolymer13615820.42UniProt (P02407)
Pfam (PF00833)		Saccharomyces cerevisiae (yeast)
13HC, M
(AL, CL)		40S ribosomal protein S18polymer14617071.62UniProt (P35271)Saccharomyces cerevisiae (yeast)
14IC, N
(AM, CM)		40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)		Saccharomyces cerevisiae (yeast)
15JC, O
(AN, CN)		40S ribosomal protein S20polymer12113929.02UniProt (P38701)
Pfam (PF00338)		Saccharomyces cerevisiae (yeast)
16KC, P
(AO, CO)		40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)		Saccharomyces cerevisiae (yeast)
17LC, Q
(AP, CP)		40S ribosomal protein S23polymer14516073.92UniProt (P32827)Saccharomyces cerevisiae (yeast)
18MC, R
(AQ, CQ)		40S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)		Saccharomyces cerevisiae (yeast)
19NC, S
(AR, CR)		40S ribosomal protein S28-Apolymer677605.82UniProt (Q3E7X9)
Pfam (PF01200)		Saccharomyces cerevisiae (yeast)
20OC, T
(AS, CS)		40S ribosomal protein S29-Apolymer566675.72UniProt (P41057)
Pfam (PF00253)		Saccharomyces cerevisiae (yeast)
21PC, U
(AT, CT)		Guanine nucleotide-binding protein subunit beta-like protein; RACK-1polymer31934841.22UniProt (P38011)
Pfam (PF00400)		Saccharomyces cerevisiae (yeast)Receptor of activated protein kinase C 1, RACK1, Receptor for activated C kinase
22QC, RB, V
(Aa, Bo, Ca)		Unassigned secondary structurepolymer201720.13Saccharomyces cerevisiae (yeast)
23RC, W
(Ab, Cb)		Unassigned secondary structurepolymer1058954.02Saccharomyces cerevisiae (yeast)
24SC, X
(Ac, Cc)		Unassigned secondary structurepolymer937932.82Saccharomyces cerevisiae (yeast)
25TC, Y
(Ad, Cd)		Unassigned secondary structurepolymer352996.72Saccharomyces cerevisiae (yeast)
26HE, MB, Z
(Ae, Bj, Dj)		Unassigned secondary structurepolymer211805.23Saccharomyces cerevisiae (yeast)
27AA
(Af)		Unassigned secondary structurepolymer11954.21Saccharomyces cerevisiae (yeast)
28BA, UC
(Ah, Ch)		Unassigned secondary structurepolymer413507.32Saccharomyces cerevisiae (yeast)
29CA, VC
(B1, D1)		25S ribosomal RNApolymer33961097493.92GenBank (BK006945.1)Saccharomyces cerevisiae S288c (yeast)
30DA, WC
(B2, D2)		5S ribosomal RNApolymer12138951.12GenBank (J01360.1)
GenBank (AE016820.4)		Saccharomyces cerevisiae (yeast)
31EA, XC
(B3, D3)		5.8S ribosomal RNApolymer15850682.92GenBank (HQ026735.1)Saccharomyces cerevisiae (yeast)
32FA, YC
(BA, DA)		60S ribosomal protein L1polymer21724524.82UniProt (P53030)Saccharomyces cerevisiae (yeast)L10a
33GA, ZC
(BB, DB)		60S ribosomal protein L2polymer25427463.62UniProt (P05736)Saccharomyces cerevisiae (yeast)L5, RP8, YL6
34AD, HA
(BC, DC)		60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)		Saccharomyces cerevisiae (yeast)
35BD, IA
(BD, DD)		60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)		Saccharomyces cerevisiae (yeast)
36CD, JA
(BE, DE)		60S ribosomal protein L5polymer29733792.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)		Saccharomyces cerevisiae (yeast)
37DD, KA
(BF, DF)		60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)		Saccharomyces cerevisiae (yeast)L17, RP18, YL16
38ED, LA
(BG, DG)		60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)		Saccharomyces cerevisiae (yeast)L6, RP11, YL8
39FD, MA
(BH, DH)		60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiae (yeast)L4, L4-2, L7a-1,
40GD, NA
(BI, DI)		60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)		Saccharomyces cerevisiae (yeast)L8, RP24, YL11
41HD, OA
(BJ, DJ)		60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)		Saccharomyces cerevisiae (yeast)
42ID, PA
(BK, DK)		60S ribosomal protein L11-Apolymer17419755.72UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)		Saccharomyces cerevisiae (yeast)L16, RP39, YL22
43LD, QA
(BN, DN)		60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiae (yeast)
44MD, RA
(BO, DO)		60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)		Saccharomyces cerevisiae (yeast)L13, RP15R, YL10, YP18
45ND, SA
(BP, DP)		60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiae (yeast)L13a, L21, RP22, YL15
46OD, TA
(BQ, DQ)		60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiae (yeast)L20A, YL17
47PD, UA
(BR, DR)		60S ribosomal protein L18polymer18620609.32UniProt (P07279)Saccharomyces cerevisiae (yeast)RP28
48QD, VA
(BS, DS)		60S ribosomal protein L19polymer18921762.32UniProt (P05735)Saccharomyces cerevisiae (yeast)L23, RP15L, RP33, YL14
49RD, WA
(BT, DT)		60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiae (yeast)
50SD, XA
(BU, DU)		60S ribosomal protein L23polymer13714494.02UniProt (P04451)Saccharomyces cerevisiae (yeast)L17a, YL32
51TD, YA
(BV, DV)		60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)		Saccharomyces cerevisiae (yeast)L30, RP29, YL21
52UD, ZA
(BW, DW)		60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiae (yeast)RP16L, YL25, YP42'
53AB, VD
(BX, DX)		60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiae (yeast)L33, YL33
54BB, WD
(BY, DY)		60S ribosomal protein L28polymer14916762.72UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiae (yeast)L27a, L29, RP44, RP62, YL24
55CB, XD
(BZ, DZ)		60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiae (yeast)L32, RP73, YL38
56DB, YD
(Ba, Da)		60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiae (yeast)L34, YL28
57EB, ZD
(Bb, Db)		60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)		Saccharomyces cerevisiae (yeast)
58AE, FB
(Bc, Dc)		60S ribosomal protein L35polymer12013942.62UniProt (P39741)Saccharomyces cerevisiae (yeast)
59BE, GB
(Bd, Dd)		60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiae (yeast)L43, YL35, YP55
60CE, HB
(Be, De)		60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiae (yeast)L46, YL40
61DE, IB
(Bf, Df)		60S ribosomal protein L42polymer10612246.72UniProt (P02405)Saccharomyces cerevisiae (yeast)
62EE, JB
(Bg, Dg)		60S ribosomal protein L43polymer9210113.02UniProt (P49631)Saccharomyces cerevisiae (yeast)L37a, YL35
63FE, KB
(Bh, Dh)		Unassigned secondary structurepolymer443762.62Saccharomyces cerevisiae (yeast)
64GE, LB
(Bi, Di)		Unassigned secondary structurepolymer121039.32Saccharomyces cerevisiae (yeast)
65IE, NB
(Bk, Dk)		Unassigned secondary structurepolymer161379.72Saccharomyces cerevisiae (yeast)
66OB
(Bl)		Unassigned secondary structurepolymer191635.01Saccharomyces cerevisiae (yeast)
67PB
(Bm)		Unassigned secondary structurepolymer9784.01Saccharomyces cerevisiae (yeast)
68QB
(Bn)		Unassigned secondary structurepolymer272315.81Saccharomyces cerevisiae (yeast)
69SB
(Bp)		Unassigned secondary structurepolymer8698.91Saccharomyces cerevisiae (yeast)
70TB
(Bq)		Unassigned secondary structurepolymer171464.81Saccharomyces cerevisiae (yeast)
71UB
(Br)		Unassigned secondary structurepolymer231975.41Saccharomyces cerevisiae (yeast)
72JD
(DL)		60S ribosomal protein L12polymer16517850.61UniProt (P17079)Saccharomyces cerevisiae (yeast)L15, YL23
73KD
(DM)		60S acidic ribosomal protein P0polymer31233798.21UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)		Saccharomyces cerevisiae (yeast)A0, L10E
74AAA, ABA, ACA, ADA, AEA...
(D1, A1, D2, B1, B2...)		osmium (III) hexamminenon-polymer286.4715Chemie (OHX)
Sequence modifications
Aa, Bo, Ca: 2 - 21 (PDB: 4V7R)
Ab, Cb: 1 - 136 (PDB: 4V7R)
Ac, Cc: 1 - 98 (PDB: 4V7R)
Ad, Cd: 84 - 118 (PDB: 4V7R)
Ae, Bj, Dj: 1 - 21 (PDB: 4V7R)
Ah, Ch: 1 - 64 (PDB: 4V7R)
B2, D2: 1 - 121 (GenBank: J01360.1)
BE, DE: 1 - 297 (UniProt: P26321)
PDBExternal DatabaseDetails
Arg 112Lys 112conflict
BY, DY: 1 - 149 (UniProt: P02406)
PDBExternal DatabaseDetails
Glu 38Gln 38conflict
DM: 1 - 312 (UniProt: P05317)
PDBExternal DatabaseDetails
Tyr 83Asn 83conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains139
Total formula weight5646898.5
Non-Polymers*Number of molecules715
Total formula weight204751.0
All*Total formula weight5851649.5
*Water molecules are not included.

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PDB entries from 2025-12-03

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