4V7P
Recognition of the amber stop codon by release factor RF1.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA, DA | 16S rRNA (1504-MER) | polymer | 1504 | 488431.2 | 2 | GenBank (AE017221.1) | Thermus thermophilus | |
2 | AB, DB | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 2 | UniProt (P62662) Pfam (PF00318) In PDB | Thermus thermophilus | |
3 | AC, DC | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
4 | AD, DD | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
5 | AE, DE | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
6 | AF, DF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) In PDB | Thermus thermophilus | |
7 | AG, DG | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P62667) Pfam (PF00177) In PDB | Thermus thermophilus | |
8 | AH, DH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) In PDB | Thermus thermophilus | |
9 | AI, DI | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 2 | UniProt (P62669) Pfam (PF00380) In PDB | Thermus thermophilus | |
10 | AJ, DJ | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 2 | UniProt (P62653) Pfam (PF00338) In PDB | Thermus thermophilus | |
11 | AK, DK | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 2 | UniProt (P62654) Pfam (PF00411) In PDB | Thermus thermophilus | |
12 | AL, DL | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 2 | UniProt (P61941) Pfam (PF00164) In PDB | Thermus thermophilus | |
13 | AM, DM | 30S ribosomal protein S13 | polymer | 117 | 13308.5 | 2 | UniProt (P62655) Pfam (PF00416) In PDB | Thermus thermophilus | |
14 | AN, DN | 30S ribosomal protein S14 | polymer | 60 | 7027.5 | 2 | UniProt (P62656) Pfam (PF00253) In PDB | Thermus thermophilus | |
15 | AO, DO | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (P62657) Pfam (PF00312) In PDB | Thermus thermophilus | |
16 | AP, DP | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 2 | UniProt (P62238) Pfam (PF00886) In PDB | Thermus thermophilus | |
17 | AQ, DQ | 30S ribosomal protein S17 | polymer | 99 | 11721.9 | 2 | UniProt (P62658) Pfam (PF00366) In PDB | Thermus thermophilus | |
18 | AR, DR | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 2 | UniProt (P62659) Pfam (PF01084) In PDB | Thermus thermophilus | |
19 | AS, DS | 30S ribosomal protein S19 | polymer | 78 | 8949.4 | 2 | UniProt (P62660) Pfam (PF00203) In PDB | Thermus thermophilus | |
20 | AT, DT | 30S ribosomal protein S20 | polymer | 99 | 10907.1 | 2 | UniProt (P62661) Pfam (PF01649) In PDB | Thermus thermophilus | |
21 | AU, DU | 30S ribosomal protein Thx | polymer | 24 | 2960.5 | 2 | UniProt (P62613) Pfam (PF17070) In PDB | Thermus thermophilus | |
22 | AV, DV | Peptide chain release factor 1 | polymer | 354 | 40153.5 | 2 | UniProt (Q72HB8) Pfam (PF03462) Pfam (PF00472) In PDB | Thermus thermophilus | RF-1 |
23 | AW, DW | P-site tRNA-fMet | polymer | 77 | 24802.8 | 2 | GenBank (CP001509.3) | Escherichia coli | |
24 | AX | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | polymer | 7 | 2245.4 | 1 | Thermus thermophilus | ||
25 | BA, CA | 23S ribosomal RNA | polymer | 2879 | 936302.1 | 2 | GenBank (AE017221.1) | Thermus thermophilus | |
26 | BB, CB | 5S ribosomal RNA | polymer | 119 | 38553.0 | 2 | GenBank (AE017221.1) | Thermus thermophilus | |
27 | BC, CC | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus | |
28 | BD, CD | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q72I04) Pfam (PF00297) In PDB | Thermus thermophilus | |
29 | BE, CE | 50S ribosomal protein L4 | polymer | 205 | 22744.3 | 2 | UniProt (Q72I05) Pfam (PF00573) In PDB | Thermus thermophilus | |
30 | BF, CF | 50S ribosomal protein L5 | polymer | 181 | 20944.4 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus | |
31 | BG, CG | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) In PDB | Thermus thermophilus | |
32 | BH, CH | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus | |
33 | BI, CI | 50S ribosomal protein L10 | polymer | 173 | 18586.6 | 2 | UniProt (Q72GS1) Pfam (PF00466) In PDB | Thermus thermophilus | |
34 | BJ, CJ | 50S ribosomal protein L13 | polymer | 139 | 15796.7 | 2 | UniProt (Q72IN1) Pfam (PF00572) In PDB | Thermus thermophilus | |
35 | BK, CK | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) In PDB | Thermus thermophilus | |
36 | BL, CL | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) In PDB | Thermus thermophilus | |
37 | BM, CM | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 2 | UniProt (Q72I11) Pfam (PF00252) In PDB | Thermus thermophilus | |
38 | BN, CN | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 2 | UniProt (Q72I33) Pfam (PF01196) In PDB | Thermus thermophilus | |
39 | BO, CO | 50S ribosomal protein L18 | polymer | 111 | 12508.6 | 2 | UniProt (Q72I20) Pfam (PF00861) In PDB | Thermus thermophilus | |
40 | BP, CP | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) In PDB | Thermus thermophilus | |
41 | BQ, CQ | 50S ribosomal protein L20 | polymer | 116 | 13500.9 | 2 | UniProt (Q72L76) Pfam (PF00453) In PDB | Thermus thermophilus | |
42 | BR, CR | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) In PDB | Thermus thermophilus | |
43 | BS, CS | 50S ribosomal protein L22 | polymer | 112 | 12678.9 | 2 | UniProt (Q72I09) Pfam (PF00237) In PDB | Thermus thermophilus | |
44 | BT, CT | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q72I06) Pfam (PF00276) In PDB | Thermus thermophilus | |
45 | BU, CU | 50S ribosomal protein L24 | polymer | 109 | 11954.4 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus | |
46 | BV, CV | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus | |
47 | BW, CW | 50S ribosomal protein L27 | polymer | 84 | 9369.9 | 2 | UniProt (Q72HR3) Pfam (PF01016) In PDB | Thermus thermophilus | |
48 | BX, CX | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 2 | UniProt (Q72G84) Pfam (PF00830) In PDB | Thermus thermophilus | |
49 | BY, CY | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) In PDB | Thermus thermophilus | |
50 | BZ, CZ | 50S ribosomal protein L30 | polymer | 59 | 6670.0 | 2 | UniProt (Q72I22) Pfam (PF00327) In PDB | Thermus thermophilus | |
51 | B1, C1 | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) In PDB | Thermus thermophilus | |
52 | B2, C2 | 50S ribosomal protein L32 | polymer | 59 | 6602.9 | 2 | UniProt (P62652) Pfam (PF01783) In PDB | Thermus thermophilus | |
53 | B3, C3 | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) In PDB | Thermus thermophilus | |
54 | B4, C4 | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
55 | B5, C5 | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 2 | UniProt (Q72L77) Pfam (PF01632) In PDB | Thermus thermophilus | |
56 | DX | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | polymer | 9 | 2903.8 | 1 | Thermus thermophilus | ||
57 | AA, BA, CA, DA, DW... | MAGNESIUM ION | non-polymer | 24.3 | 410 | Chemie (MG) | |||
58 | DD, DN, AD, AN | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
BA, CA: 6 - 2897 (GenBank: AE017221.1)
BQ, CQ: 2 - 118 (UniProt: Q72L76)
PDB | External Database | Details |
---|---|---|
U 1142 | C 1535654 | conflict |
U 2825 | G 1537301 | conflict |
PDB | External Database | Details |
---|---|---|
- | Phe 32 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 110 |
Total formula weight | 4424537.5 | |
Non-Polymers* | Number of molecules | 414 |
Total formula weight | 10226.7 | |
All* | Total formula weight | 4434764.2 |