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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V7P

Recognition of the amber stop codon by release factor RF1.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, DA16S rRNA (1504-MER)polymer1504488431.22GenBank (AE017221.1)Thermus thermophilus
2AB, DB30S ribosomal protein S2polymer23426987.32UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AC, DC30S ribosomal protein S3polymer20622862.42UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4AD, DD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5AE, DE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6AF, DF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus
7AG, DG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus
8AH, DH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus
9AI, DI30S ribosomal protein S9polymer12714298.52UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus
10AJ, DJ30S ribosomal protein S10polymer9811299.22UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus
11AK, DK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus
12AL, DL30S ribosomal protein S12polymer12413804.32UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus
13AM, DM30S ribosomal protein S13polymer11713308.52UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus
14AN, DN30S ribosomal protein S14polymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus
15AO, DO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus
16AP, DP30S ribosomal protein S16polymer839924.52UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus
17AQ, DQ30S ribosomal protein S17polymer9911721.92UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus
18AR, DR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AS, DS30S ribosomal protein S19polymer788949.42UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus
20AT, DT30S ribosomal protein S20polymer9910907.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus
21AU, DU30S ribosomal protein Thxpolymer242960.52UniProt (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus
22AV, DVPeptide chain release factor 1polymer35440153.52UniProt (Q72HB8)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Thermus thermophilusRF-1
23AW, DWP-site tRNA-fMetpolymer7724802.82GenBank (CP001509.3)Escherichia coli
24AXmessenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')polymer72245.41Thermus thermophilus
25BA, CA23S ribosomal RNApolymer2879936302.12GenBank (AE017221.1)Thermus thermophilus
26BB, CB5S ribosomal RNApolymer11938553.02GenBank (AE017221.1)Thermus thermophilus
27BC, CC50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
28BD, CD50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus
29BE, CE50S ribosomal protein L4polymer20522744.32UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus
30BF, CF50S ribosomal protein L5polymer18120944.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
31BG, CG50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus
32BH, CH50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF03948)
Pfam (PF01281)
In PDB		Thermus thermophilus
33BI, CI50S ribosomal protein L10polymer17318586.62UniProt (Q72GS1)
Pfam (PF00466)
In PDB		Thermus thermophilus
34BJ, CJ50S ribosomal protein L13polymer13915796.72UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus
35BK, CK50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus
36BL, CL50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus
37BM, CM50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus
38BN, CN50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus
39BO, CO50S ribosomal protein L18polymer11112508.62UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus
40BP, CP50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus
41BQ, CQ50S ribosomal protein L20polymer11613500.92UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus
42BR, CR50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus
43BS, CS50S ribosomal protein L22polymer11212678.92UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus
44BT, CT50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus
45BU, CU50S ribosomal protein L24polymer10911954.42UniProt (Q72I15)
Pfam (PF17136)
Pfam (PF00467)
In PDB		Thermus thermophilus
46BV, CV50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
47BW, CW50S ribosomal protein L27polymer849369.92UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus
48BX, CX50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus
49BY, CY50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus
50BZ, CZ50S ribosomal protein L30polymer596670.02UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus
51B1, C150S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus
52B2, C250S ribosomal protein L32polymer596602.92UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus
53B3, C350S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus
54B4, C450S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
55B5, C550S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus
56DXmessenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')polymer92903.81Thermus thermophilus
57AA, BA, CA, DA, DW...MAGNESIUM IONnon-polymer24.3410Chemie (MG)
58DD, DN, AD, ANZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
BA, CA: 6 - 2897 (GenBank: AE017221.1)
PDBExternal DatabaseDetails
U 1142C 1535654conflict
U 2825G 1537301conflict
BQ, CQ: 2 - 118 (UniProt: Q72L76)
PDBExternal DatabaseDetails
-Phe 32deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains110
Total formula weight4424537.5
Non-Polymers*Number of molecules414
Total formula weight10226.7
All*Total formula weight4434764.2
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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