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4V6X

Structure of the human 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AzElongation factor 2polymer85895463.21UniProt (P13639)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Homo sapiens (human)EF-2
2AgGuanine nucleotide-binding protein subunit beta-2-like 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
In PDB
Homo sapiens (human)Cell proliferation-inducing gene 21 protein, Guanine nucleotide-binding protein subunit beta-like protein 12.3, Human lung cancer oncogene 7 protein, HLC-7, Receptor for activated C kinase, Receptor of activated protein kinase C 1, RACK1
3AU40S ribosomal protein S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
In PDB
Homo sapiens (human)
4AK40S ribosomal protein S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
In PDB
Homo sapiens (human)
5AO40S ribosomal protein S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
In PDB
Homo sapiens (human)
6AX40S ribosomal protein S23polymer14315844.71UniProt (P62266)
Pfam (PF00164)
In PDB
Homo sapiens (human)
7AM40S ribosomal protein S12polymer13214548.91UniProt (P25398)
Pfam (PF01248)
In PDB
Homo sapiens (human)
8AS40S ribosomal protein S18polymer15217759.81UniProt (P62269)
Pfam (PF00416)
In PDB
Homo sapiens (human)Ke-3, Ke3
9Ad40S ribosomal protein S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
In PDB
Homo sapiens (human)
10AN40S ribosomal protein S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Homo sapiens (human)
11AL40S ribosomal protein S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Homo sapiens (human)
12AR40S ribosomal protein S17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
In PDB
Homo sapiens (human)
13AP40S ribosomal protein S15polymer14517076.21UniProt (P62841)
Pfam (PF00203)
In PDB
Homo sapiens (human)RIG protein
14AT40S ribosomal protein S19polymer14516091.61UniProt (P39019)
Pfam (PF01090)
In PDB
Homo sapiens (human)
15AB40S ribosomal protein S3apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
In PDB
Homo sapiens (human)v-fos transformation effector protein, Fte-1
16AA40S ribosomal protein SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Homo sapiens (human)37 kDa laminin receptor precursor, 37LRP, 37/67 kDa laminin receptor, LRP/LR, 67 kDa laminin receptor, 67LR, Colon carcinoma laminin-binding protein, Laminin receptor 1, LamR, Laminin-binding protein precursor p40, LBP/p40, Multidrug resistance-associated protein MGr1-Ag, NEM/1CHD4
17AV40S ribosomal protein S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
In PDB
Homo sapiens (human)
18AY40S ribosomal protein S24polymer13315463.31UniProt (P62847)
Pfam (PF01282)
In PDB
Homo sapiens (human)
19AZ40S ribosomal protein S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
In PDB
Homo sapiens (human)
20Aa40S ribosomal protein S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
In PDB
Homo sapiens (human)
21Ab40S ribosomal protein S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
In PDB
Homo sapiens (human)Metallopan-stimulin 1, MPS-1
22Ac40S ribosomal protein S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
In PDB
Homo sapiens (human)
23AD40S ribosomal protein S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Homo sapiens (human)
24Ae40S ribosomal protein S30polymer596668.91UniProt (P62861)
Pfam (PF04758)
In PDB
Homo sapiens (human)
25Af40S ribosomal protein S27apolymer809445.21UniProt (P62979)
Pfam (PF01599)
In PDB
Homo sapiens (human)
26AJ40S ribosomal protein S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Homo sapiens (human)
27AE40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62701)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
In PDB
Homo sapiens (human)SCR10, Single copy abundant mRNA protein
28AC40S ribosomal protein S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Homo sapiens (human)40S ribosomal protein S4, Protein LLRep3
29AG40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
In PDB
Homo sapiens (human)Phosphoprotein NP33
30AF40S ribosomal protein S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
In PDB
Homo sapiens (human)40S ribosomal protein S5, N-terminally processed
31AH40S ribosomal protein S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
In PDB
Homo sapiens (human)
32AW40S ribosomal protein S15apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
In PDB
Homo sapiens (human)
33AI40S ribosomal protein S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
In PDB
Homo sapiens (human)
34AQ40S ribosomal protein S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
In PDB
Homo sapiens (human)
35AhPlasminogen activator inhibitor 1 RNA-binding proteinpolymer40845051.51UniProt (Q8NC51)
Pfam (PF16174)
Pfam (PF04774)
In PDB
Homo sapiens (human)PAI1 RNA-binding protein 1, PAI-RBP1, SERPINE1 mRNA-binding protein 1
36B218S ribosomal RNApolymer1869602776.91GenBank (X03205)Homo sapiens (human)
37BCE-tRNApolymer7524231.51GenBank (K00328)Homo sapiens (human)
38Cz60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB
Homo sapiens (human)CSA-19, Neural precursor cell expressed developmentally down-regulated protein 6, NEDD-6
39Cq60S acidic ribosomal protein P0polymer31734309.41UniProt (P05388)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB
Homo sapiens (human)60S ribosomal protein L10E
40CK60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (human)
41CO60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB
Homo sapiens (human)23 kDa highly basic protein
42CL60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB
Homo sapiens (human)Breast basic conserved protein 1
43CV60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB
Homo sapiens (human)60S ribosomal protein L17
44CM60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB
Homo sapiens (human)CAG-ISL 7
45Ca60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB
Homo sapiens (human)
46CN60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB
Homo sapiens (human)
47CI60S ribosomal protein L10-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
In PDB
Homo sapiens (human)
48CD60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Homo sapiens (human)
49CQ60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB
Homo sapiens (human)
50CR60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB
Homo sapiens (human)
51CA60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (human)
52CS60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB
Homo sapiens (human)
53CT60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB
Homo sapiens (human)
54CP60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB
Homo sapiens (human)60S ribosomal protein L23, PD-1
55CU60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB
Homo sapiens (human)EBER-associated protein, EAP, Epstein-Barr virus small RNA-associated protein, Heparin-binding protein HBp15
56CX60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Homo sapiens (human)
57CY60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Homo sapiens (human)
58CW60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB
Homo sapiens (human)60S ribosomal protein L30
59CZ60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Homo sapiens (human)
60Cr60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB
Homo sapiens (human)
61Ch60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB
Homo sapiens (human)
62Cb60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB
Homo sapiens (human)Cell surface heparin-binding protein HIP
63CB60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB
Homo sapiens (human)HIV-1 TAR RNA-binding protein B, TARBP-B
64CF60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)
65Cc60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB
Homo sapiens (human)
66Cd60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB
Homo sapiens (human)
67Ce60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB
Homo sapiens (human)
68Cf60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB
Homo sapiens (human)Cell growth-inhibiting gene 33 protein
69Cg60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB
Homo sapiens (human)
70Ci60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB
Homo sapiens (human)
71Cj60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB
Homo sapiens (human)G1.16
72Ck60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB
Homo sapiens (human)
73Cl60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB
Homo sapiens (human)
74CC60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Homo sapiens (human)60S ribosomal protein L1
75Cm60S ribosomal protein L40polymer526199.61UniProt (P62987)
Pfam (PF01020)
In PDB
Homo sapiens (human)CEP52
76Cn60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
In PDB
Homo sapiens (human)HG12
77Cp60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB
Homo sapiens (human)
78Co60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB
Homo sapiens (human)60S ribosomal protein L44, Cell growth-inhibiting gene 15 protein, Cell migration-inducing gene 6 protein
79CJ60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Homo sapiens (human)CLL-associated antigen KW-12
80CH60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB
Homo sapiens (human)
81CE60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Homo sapiens (human)Neoplasm-related protein C140, Tax-responsive enhancer element-binding protein 107, TaxREB107
82CG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB
Homo sapiens (human)PLA-X polypeptide, Surfeit locus protein 3
83Cs, Ct60S acidic ribosomal protein P1polymer11411521.92UniProt (P05386)
Pfam (PF00428)
In PDB
Homo sapiens (human)
84Cu, Cv60S acidic ribosomal protein P2polymer11511676.92UniProt (P05387)
Pfam (PF00428)
In PDB
Homo sapiens (human)Renal carcinoma antigen NY-REN-44
85A528S ribosomal RNApolymer50701640222.11GenBank (NR_003287)Homo sapiens (human)
86A75S ribosomal RNApolymer12138998.11GenBank (V00589)Homo sapiens (human)
87A85.8S ribosomal RNApolymer15750449.81GenBank (NR_046235)Homo sapiens (human)
Sequence modifications
AM: 1 - 132 (UniProt: P25398)
PDBExternal DatabaseDetails
Gln 52Leu 52conflict
Leu 69Cys 69conflict
Asn 99Lys 99conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains89
Total formula weight4051275.2
All*Total formula weight4051275.2
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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