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4V6W

Structure of the D. melanogaster 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(Az)
Elongation factor 2polymer84494586.01UniProt (P13060)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
Drosophila melanogaster (Fruit fly)EF-2
2B
(Ag)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31835661.91UniProt (O18640)
Pfam (PF00400)
Drosophila melanogaster (Fruit fly)Receptor of activated protein kinase C homolog
3C
(AU)
40S ribosomal protein S20polymer12013513.71UniProt (P55828)
Pfam (PF00338)
Drosophila melanogaster (Fruit fly)
4D
(AK)
40S ribosomal protein S10apolymer16318259.61UniProt (Q9VB14)
Pfam (PF03501)
Drosophila melanogaster (Fruit fly)
5E
(AO)
40S ribosomal protein S14polymer15116294.81UniProt (P14130)
Pfam (PF00411)
UniProt (by SIFTS) (C0HKA0)
Drosophila melanogaster (Fruit fly)
6F
(AX)
40S ribosomal protein S23polymer14316054.81UniProt (Q8T3U2)
Pfam (PF00164)
Drosophila melanogaster (Fruit fly)
7G
(AM)
40S ribosomal protein S12polymer13915191.61UniProt (P80455)
Pfam (PF01248)
Drosophila melanogaster (Fruit fly)
8H
(AS)
40S ribosomal protein S18polymer15217649.61UniProt (P41094)
Pfam (PF00416)
Drosophila melanogaster (Fruit fly)
9I
(Ad)
40S ribosomal protein S29polymer566603.71UniProt (Q9VH69)
Pfam (PF00253)
Drosophila melanogaster (Fruit fly)
10J
(AN)
40S ribosomal protein S13polymer15117216.41UniProt (Q03334)
Pfam (PF08069)
Pfam (PF00312)
Drosophila melanogaster (Fruit fly)
11K
(AL)
40S ribosomal protein S11polymer15518149.41UniProt (Q0E9B6)
Pfam (PF16205)
Pfam (PF00366)
Drosophila melanogaster (Fruit fly)
12L
(AR)
40S ribosomal protein S17polymer13115313.81UniProt (P17704)
Pfam (PF00833)
Drosophila melanogaster (Fruit fly)
13M
(AP)
40S ribosomal protein S15, isoform Apolymer14817073.21UniProt (Q7JZW2)
Pfam (PF00203)
Drosophila melanogaster (Fruit fly)RE08270p
14N
(AT)
40S ribosomal protein S19apolymer15617327.21UniProt (P39018)
Pfam (PF01090)
Drosophila melanogaster (Fruit fly)
15O
(AB)
40S ribosomal protein S3apolymer26830393.21UniProt (P55830)
Pfam (PF01015)
Drosophila melanogaster (Fruit fly)C3 protein
16P
(AA)
40S ribosomal protein SApolymer31335384.31UniProt (P38979)
Pfam (PF00318)
Pfam (PF16122)
Drosophila melanogaster (Fruit fly)K14, Laminin receptor homolog, Protein stubarista
17Q
(AV)
40S ribosomal protein S21polymer839031.21UniProt (O76927)
Pfam (PF01249)
Drosophila melanogaster (Fruit fly)Overgrown hematopoietic organs at 23B
18R
(AY)
40S ribosomal protein S24polymer13115082.81UniProt (Q9W229)
Pfam (PF01282)
Drosophila melanogaster (Fruit fly)
19S
(AZ)
40S ribosomal protein S25polymer11713234.61UniProt (P48588)
Pfam (PF03297)
Drosophila melanogaster (Fruit fly)
20T
(Aa)
40S ribosomal protein S26polymer11413300.71UniProt (P13008)
Pfam (PF01283)
Drosophila melanogaster (Fruit fly)DS31
21U
(Ab)
40S ribosomal protein S27polymer849382.21UniProt (Q9VBU9)
Pfam (PF01667)
Drosophila melanogaster (Fruit fly)
22V
(Ac)
40S ribosomal protein S28polymer657489.71UniProt (Q9W334)
Pfam (PF01200)
Drosophila melanogaster (Fruit fly)
23W
(AD)
40S ribosomal protein S3polymer24627515.11UniProt (Q06559)
Pfam (PF07650)
Pfam (PF00189)
Drosophila melanogaster (Fruit fly)
24X
(Ae)
40S ribosomal protein S30, isoform Apolymer13214608.71UniProt (Q9VDH8)
Pfam (PF04758)
Drosophila melanogaster (Fruit fly)Ribosomal protein S30, isoform B
25Y
(Af)
40S ribosomal protein S27apolymer809421.21UniProt (P15357)
Pfam (PF01599)
Drosophila melanogaster (Fruit fly)
26Z
(AJ)
40S ribosomal protein S9polymer19522672.61UniProt (P55935)
Pfam (PF00163)
Pfam (PF01479)
Drosophila melanogaster (Fruit fly)
27AA
(AE)
40S ribosomal protein S4polymer26129191.31UniProt (P41042)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
Drosophila melanogaster (Fruit fly)
28BA
(AC)
40S ribosomal protein S2polymer26728947.71UniProt (P31009)
Pfam (PF00333)
Pfam (PF03719)
Drosophila melanogaster (Fruit fly)Protein strings of pearls
29CA
(AG)
40S ribosomal protein S6polymer24828478.71UniProt (P29327)
Pfam (PF01092)
Drosophila melanogaster (Fruit fly)
30DA
(AF)
40S ribosomal protein S5apolymer22825471.41UniProt (Q24186)
Pfam (PF00177)
Drosophila melanogaster (Fruit fly)
31EA
(AH)
40S ribosomal protein S7polymer19422210.01UniProt (Q9VA91)
Pfam (PF01251)
Drosophila melanogaster (Fruit fly)
32FA
(AW)
40S ribosomal protein S15Aapolymer13014796.51UniProt (P48149)
Pfam (PF00410)
Drosophila melanogaster (Fruit fly)
33GA
(AI)
40S ribosomal protein S8polymer20823814.61UniProt (Q8MLY8)
Pfam (PF01201)
Drosophila melanogaster (Fruit fly)
34HA
(AQ)
40S ribosomal protein S16polymer14816806.71UniProt (Q9W237)
Pfam (PF00380)
Drosophila melanogaster (Fruit fly)
35IA
(Ah)
Vig2, isoform Bpolymer12113542.51UniProt (Q9VBX3)
Pfam (PF04774)
Drosophila melanogaster (Fruit fly)
36JA
(B2)
18S ribosomal RNApolymer1995641830.41GenBank (M21017)Drosophila melanogaster (fruit fly)
37KA
(BC)
E-tRNApolymer7524249.51GenBank (K00325)Drosophila melanogaster (fruit fly)
38LA
(Cz)
60S ribosomal protein L10a-2polymer21824404.81UniProt (Q9VTP4)
Pfam (PF00687)
Drosophila melanogaster (Fruit fly)
39MA
(Cq)
60S acidic ribosomal protein P0polymer22324401.51Pfam (PF00466)
Pfam (PF17777)
UniProt (by SIFTS) (P05388)
Drosophila melanogaster (Fruit fly)60S ribosomal protein L10E
40NA
(CK)
60S ribosomal protein L12polymer16517701.71UniProt (Q9W1B9)
Pfam (PF03946)
Pfam (PF00298)
Drosophila melanogaster (Fruit fly)
41OA
(CO)
60S ribosomal protein L13apolymer20523701.21UniProt (Q9VNE9)
Pfam (PF00572)
Drosophila melanogaster (Fruit fly)
42PA
(CL)
60S ribosomal protein L13polymer21825012.41UniProt (P41126)
Pfam (PF01294)
Drosophila melanogaster (Fruit fly)BBC1 protein homolog
43QA
(CV)
60S ribosomal protein L23polymer14014962.61UniProt (P48159)
Pfam (PF00238)
Drosophila melanogaster (Fruit fly)L17A
44RA
(CM)
60S ribosomal protein L14polymer16619217.61UniProt (P55841)
Pfam (PF01929)
Drosophila melanogaster (Fruit fly)
45SA
(Ca)
60S ribosomal protein L27apolymer14917070.21UniProt (P41092)
Pfam (PF00828)
Drosophila melanogaster (Fruit fly)
46TA
(CN)
60S ribosomal protein L15polymer20424388.61UniProt (O17445)
Pfam (PF00827)
Drosophila melanogaster (Fruit fly)
47UA
(CI)
60S ribosomal protein L10polymer21825579.81UniProt (O61231)
Pfam (PF00252)
Drosophila melanogaster (Fruit fly)QM protein homolog, dQM
48VA
(CD)
60S ribosomal protein L5polymer29934101.01UniProt (Q9W5R8)
Pfam (PF17144)
Pfam (PF14204)
Drosophila melanogaster (Fruit fly)
49WA
(CQ)
60S ribosomal protein L18polymer18821713.71UniProt (Q9VS34)
Pfam (PF17135)
Drosophila melanogaster (Fruit fly)
50XA
(CR)
60S ribosomal protein L19polymer20324065.71UniProt (P36241)
Pfam (PF01280)
Drosophila melanogaster (Fruit fly)
51YA
(CA)
60S ribosomal protein L8polymer25627957.71UniProt (Q9V3G1)
Pfam (PF00181)
Pfam (PF03947)
Drosophila melanogaster (Fruit fly)
52ZA
(CS)
60S ribosomal protein L18apolymer17721076.81UniProt (P41093)
Pfam (PF01775)
Drosophila melanogaster (Fruit fly)
53AB
(CT)
60S ribosomal protein L21polymer15918519.91UniProt (Q9V9M7)
Pfam (PF01157)
Drosophila melanogaster (Fruit fly)RH06526p, RE62581p
54BB
(CP)
60S ribosomal protein L17polymer18621642.21UniProt (Q9W3W8)
Pfam (PF00237)
Drosophila melanogaster (Fruit fly)
55CB
(CU)
60S ribosomal protein L22polymer29930675.71UniProt (P50887)
Pfam (PF01776)
Drosophila melanogaster (Fruit fly)
56DB
(CX)
60S ribosomal protein L23Apolymer27729539.41UniProt (Q9W0A8)
Pfam (PF03939)
Pfam (PF00276)
Drosophila melanogaster (Fruit fly)FI01658p
57EB
(CY)
60S ribosomal protein L26polymer14917322.31UniProt (Q9VVU2)
Pfam (PF16906)
Pfam (PF00467)
Drosophila melanogaster (Fruit fly)RE17611p
58FB
(CW)
60S ribosomal protein L24polymer15517568.11UniProt (Q9VJY6)
Pfam (PF01246)
Drosophila melanogaster (Fruit fly)
59GB
(CZ)
60S ribosomal protein L27polymer13515945.11UniProt (Q9VBN5)
Pfam (PF00467)
Pfam (PF01777)
Drosophila melanogaster (Fruit fly)
60HB
(Cr)
60S ribosomal protein L28polymer14416067.01UniProt (Q9VZS5)
Pfam (PF01778)
Drosophila melanogaster (Fruit fly)
61IB
(Ch)
60S ribosomal protein L35polymer12314491.71UniProt (Q9W499)
Pfam (PF00831)
Drosophila melanogaster (Fruit fly)FI02809p
62JB
(Cb)
60S ribosomal protein L29polymer768945.41UniProt (Q24154)
Pfam (PF01779)
Drosophila melanogaster (Fruit fly)L43
63KB
(CB)
60S ribosomal protein L3polymer41647020.11UniProt (O16797)
Pfam (PF00297)
Drosophila melanogaster (Fruit fly)
64LB
(CF)
60S ribosomal protein L7polymer25229615.21UniProt (P32100)
Pfam (PF08079)
Pfam (PF00327)
Drosophila melanogaster (Fruit fly)
65MB
(Cc)
60S ribosomal protein L30polymer11112253.41UniProt (Q9VJ19)
Pfam (PF01248)
Drosophila melanogaster (Fruit fly)RE25263p
66NB
(Cd)
60S ribosomal protein L31polymer12414563.71UniProt (Q9V597)
Pfam (PF01198)
Drosophila melanogaster (Fruit fly)
67OB
(Ce)
60S ribosomal protein L32polymer13416060.91UniProt (P04359)
Pfam (PF01655)
Drosophila melanogaster (Fruit fly)Ribosomal protein 49
68PB
(Cf)
60S ribosomal protein L35Apolymer15717701.81UniProt (Q9VNB9)
Pfam (PF01247)
Drosophila melanogaster (Fruit fly)RH44960p, RE17737p
69QB
(Cg)
60S ribosomal protein L34apolymer16218117.91UniProt (Q9VBH8)
Pfam (PF01199)
Drosophila melanogaster (Fruit fly)FI02850p
70RB
(Ci)
60S ribosomal protein L36polymer11513541.21UniProt (P49630)
Pfam (PF01158)
Drosophila melanogaster (Fruit fly)Protein minute(1)1B
71SB
(Cj)
60S ribosomal protein L37-Apolymer9310673.51UniProt (Q9VXX8)
Pfam (PF01907)
Drosophila melanogaster (Fruit fly)
72TB
(Ck)
60S ribosomal protein L38polymer708219.81UniProt (Q9W5N2)
Pfam (PF01781)
Drosophila melanogaster (Fruit fly)
73UB
(Cl)
60S ribosomal protein L39polymer516318.61UniProt (O16130)
Pfam (PF00832)
Drosophila melanogaster (Fruit fly)Ribosomal protein 46
74VB
(CC)
60S ribosomal protein L4polymer40145121.01UniProt (P09180)
Pfam (PF00573)
Pfam (PF14374)
Drosophila melanogaster (Fruit fly)L1
75WB
(Cm)
60S ribosomal protein L40polymer526200.61UniProt (P18101)
Pfam (PF01020)
Drosophila melanogaster (Fruit fly)
76XB
(Cn)
60S ribosomal protein L41polymer253416.41UniProt (Q962S2)
Pfam (PF05162)
Drosophila melanogaster (Fruit fly)RE63504p
77YB
(Cp)
60S ribosomal protein L37apolymer9210335.31UniProt (Q9VMU4)
Pfam (PF01780)
Drosophila melanogaster (Fruit fly)
78ZB
(Co)
60S ribosomal protein L36Apolymer10412540.21UniProt (Q9VLT7)
Pfam (PF00935)
Drosophila melanogaster (Fruit fly)IP17351p
79AC
(CJ)
60S ribosomal protein L11polymer18421153.51UniProt (P46222)
Pfam (PF00281)
Pfam (PF00673)
Drosophila melanogaster (Fruit fly)
80BC
(CH)
60S ribosomal protein L9polymer19021426.01UniProt (P50882)
Pfam (PF00347)
Drosophila melanogaster (Fruit fly)
81CC
(CE)
60S ribosomal protein L6, isoform Apolymer24327766.11UniProt (Q9V9W2)
Pfam (PF03868)
Pfam (PF01159)
Drosophila melanogaster (Fruit fly)
82DC
(CG)
60S ribosomal protein L7apolymer27130803.01UniProt (P46223)
Pfam (PF01248)
Drosophila melanogaster (Fruit fly)
83EC
(A5)
28S ribosomal RNApolymer39701277668.51GenBank (M21017)Drosophila melanogaster (fruit fly)
84FC
(A9)
2S ribosomal RNApolymer309665.71GenBank (M21017)Drosophila melanogaster (fruit fly)
85GC
(A7)
5S ribosomal RNApolymer12038627.91GenBank (M25016)Drosophila melanogaster (fruit fly)
86HC
(A8)
5.8S ribosomal RNApolymer12339616.61GenBank (M21017)Drosophila melanogaster (fruit fly)
Sequence modifications
AV: 1 - 83 (UniProt: O76927)
PDBExternal DatabaseDetails
Gln 2Glu 2conflict
Phe 8Asn 8conflict
Gly 25His 25conflict
Ile 32Val 32conflict
Met 34Leu 34conflict
Asn 35Ser 35conflict
Val 36Ile 36conflict
Ala 58Glu 58conflict
Ser 68Cys 68conflict
Leu 70Val 70conflict
Ala 75Lys 75conflict
Val 79Ile 79conflict
Ser 80Thr 80conflict
Ah: 108 - 228 (UniProt: Q9VBX3)
PDBExternal DatabaseDetails
Lys 212Glu 243conflict
Glu 213Asp 244conflict
Pro 215Ser 246conflict
Glu 217Gln 248conflict
Ile 226Leu 257conflict
Gln 227Arg 258conflict
Asn 228Asp 259conflict
Cz: 1 - 217 (UniProt: Q9VTP4)
PDBExternal DatabaseDetails
Ser 72-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3670250.0
All*Total formula weight3670250.0
*Water molecules are not included.

240971

PDB entries from 2025-08-27

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