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4V6W

Structure of the D. melanogaster 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AzElongation factor 2polymer84494586.01UniProt (P13060)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Drosophila melanogaster (Fruit fly)EF-2
2AgGuanine nucleotide-binding protein subunit beta-like proteinpolymer31835661.91UniProt (O18640)
Pfam (PF00400)
In PDB
Drosophila melanogaster (Fruit fly)Receptor of activated protein kinase C homolog
3AU40S ribosomal protein S20polymer12013513.71UniProt (P55828)
Pfam (PF00338)
In PDB
Drosophila melanogaster (Fruit fly)
4AK40S ribosomal protein S10apolymer16318259.61UniProt (Q9VB14)
Pfam (PF03501)
In PDB
Drosophila melanogaster (Fruit fly)
5AO40S ribosomal protein S14polymer15116294.81UniProt (P14130)
UniProt (by SIFTS) (C0HKA0)
Pfam (PF00411)
In PDB
Drosophila melanogaster (Fruit fly)
6AX40S ribosomal protein S23polymer14316054.81UniProt (Q8T3U2)
Pfam (PF00164)
In PDB
Drosophila melanogaster (Fruit fly)
7AM40S ribosomal protein S12polymer13915191.61UniProt (P80455)
Pfam (PF01248)
In PDB
Drosophila melanogaster (Fruit fly)
8AS40S ribosomal protein S18polymer15217649.61UniProt (P41094)
Pfam (PF00416)
In PDB
Drosophila melanogaster (Fruit fly)
9Ad40S ribosomal protein S29polymer566603.71UniProt (Q9VH69)
Pfam (PF00253)
In PDB
Drosophila melanogaster (Fruit fly)
10AN40S ribosomal protein S13polymer15117216.41UniProt (Q03334)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Drosophila melanogaster (Fruit fly)
11AL40S ribosomal protein S11polymer15518149.41UniProt (Q0E9B6)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Drosophila melanogaster (Fruit fly)
12AR40S ribosomal protein S17polymer13115313.81UniProt (P17704)
Pfam (PF00833)
In PDB
Drosophila melanogaster (Fruit fly)
13AP40S ribosomal protein S15, isoform Apolymer14817073.21UniProt (Q7JZW2)
Pfam (PF00203)
In PDB
Drosophila melanogaster (Fruit fly)RE08270p
14AT40S ribosomal protein S19apolymer15617327.21UniProt (P39018)
Pfam (PF01090)
In PDB
Drosophila melanogaster (Fruit fly)
15AB40S ribosomal protein S3apolymer26830393.21UniProt (P55830)
Pfam (PF01015)
In PDB
Drosophila melanogaster (Fruit fly)C3 protein
16AA40S ribosomal protein SApolymer31335384.31UniProt (P38979)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Drosophila melanogaster (Fruit fly)K14, Laminin receptor homolog, Protein stubarista
17AV40S ribosomal protein S21polymer839031.21UniProt (O76927)
Pfam (PF01249)
In PDB
Drosophila melanogaster (Fruit fly)Overgrown hematopoietic organs at 23B
18AY40S ribosomal protein S24polymer13115082.81UniProt (Q9W229)
Pfam (PF01282)
In PDB
Drosophila melanogaster (Fruit fly)
19AZ40S ribosomal protein S25polymer11713234.61UniProt (P48588)
Pfam (PF03297)
In PDB
Drosophila melanogaster (Fruit fly)
20Aa40S ribosomal protein S26polymer11413300.71UniProt (P13008)
Pfam (PF01283)
In PDB
Drosophila melanogaster (Fruit fly)DS31
21Ab40S ribosomal protein S27polymer849382.21UniProt (Q9VBU9)
Pfam (PF01667)
In PDB
Drosophila melanogaster (Fruit fly)
22Ac40S ribosomal protein S28polymer657489.71UniProt (Q9W334)
Pfam (PF01200)
In PDB
Drosophila melanogaster (Fruit fly)
23AD40S ribosomal protein S3polymer24627515.11UniProt (Q06559)
Pfam (PF00189)
Pfam (PF07650)
In PDB
Drosophila melanogaster (Fruit fly)
24Ae40S ribosomal protein S30, isoform Apolymer13214608.71UniProt (Q9VDH8)
Pfam (PF04758)
In PDB
Drosophila melanogaster (Fruit fly)Ribosomal protein S30, isoform B
25Af40S ribosomal protein S27apolymer809421.21UniProt (P15357)
Pfam (PF01599)
In PDB
Drosophila melanogaster (Fruit fly)
26AJ40S ribosomal protein S9polymer19522672.61UniProt (P55935)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Drosophila melanogaster (Fruit fly)
27AE40S ribosomal protein S4polymer26129191.31UniProt (P41042)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
In PDB
Drosophila melanogaster (Fruit fly)
28AC40S ribosomal protein S2polymer26728947.71UniProt (P31009)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Drosophila melanogaster (Fruit fly)Protein strings of pearls
29AG40S ribosomal protein S6polymer24828478.71UniProt (P29327)
Pfam (PF01092)
In PDB
Drosophila melanogaster (Fruit fly)
30AF40S ribosomal protein S5apolymer22825471.41UniProt (Q24186)
Pfam (PF00177)
In PDB
Drosophila melanogaster (Fruit fly)
31AH40S ribosomal protein S7polymer19422210.01UniProt (Q9VA91)
Pfam (PF01251)
In PDB
Drosophila melanogaster (Fruit fly)
32AW40S ribosomal protein S15Aapolymer13014796.51UniProt (P48149)
Pfam (PF00410)
In PDB
Drosophila melanogaster (Fruit fly)
33AI40S ribosomal protein S8polymer20823814.61UniProt (Q8MLY8)
Pfam (PF01201)
In PDB
Drosophila melanogaster (Fruit fly)
34AQ40S ribosomal protein S16polymer14816806.71UniProt (Q9W237)
Pfam (PF00380)
In PDB
Drosophila melanogaster (Fruit fly)
35AhVig2, isoform Bpolymer12113542.51UniProt (Q9VBX3)
Pfam (PF04774)
In PDB
Drosophila melanogaster (Fruit fly)
36B218S ribosomal RNApolymer1995641830.41GenBank (M21017)Drosophila melanogaster (fruit fly)
37BCE-tRNApolymer7524249.51GenBank (K00325)Drosophila melanogaster (fruit fly)
38Cz60S ribosomal protein L10a-2polymer21824404.81UniProt (Q9VTP4)
Pfam (PF00687)
In PDB
Drosophila melanogaster (Fruit fly)
39Cq60S acidic ribosomal protein P0polymer22324401.51Pfam (PF00466)
Pfam (PF17777)
UniProt (by SIFTS) (P05388)
In PDB
Drosophila melanogaster (Fruit fly)60S ribosomal protein L10E
40CK60S ribosomal protein L12polymer16517701.71UniProt (Q9W1B9)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Drosophila melanogaster (Fruit fly)
41CO60S ribosomal protein L13apolymer20523701.21UniProt (Q9VNE9)
Pfam (PF00572)
In PDB
Drosophila melanogaster (Fruit fly)
42CL60S ribosomal protein L13polymer21825012.41UniProt (P41126)
Pfam (PF01294)
In PDB
Drosophila melanogaster (Fruit fly)BBC1 protein homolog
43CV60S ribosomal protein L23polymer14014962.61UniProt (P48159)
Pfam (PF00238)
In PDB
Drosophila melanogaster (Fruit fly)L17A
44CM60S ribosomal protein L14polymer16619217.61UniProt (P55841)
Pfam (PF01929)
In PDB
Drosophila melanogaster (Fruit fly)
45Ca60S ribosomal protein L27apolymer14917070.21UniProt (P41092)
Pfam (PF00828)
In PDB
Drosophila melanogaster (Fruit fly)
46CN60S ribosomal protein L15polymer20424388.61UniProt (O17445)
Pfam (PF00827)
In PDB
Drosophila melanogaster (Fruit fly)
47CI60S ribosomal protein L10polymer21825579.81UniProt (O61231)
Pfam (PF00252)
In PDB
Drosophila melanogaster (Fruit fly)QM protein homolog, dQM
48CD60S ribosomal protein L5polymer29934101.01UniProt (Q9W5R8)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Drosophila melanogaster (Fruit fly)
49CQ60S ribosomal protein L18polymer18821713.71UniProt (Q9VS34)
Pfam (PF17135)
In PDB
Drosophila melanogaster (Fruit fly)
50CR60S ribosomal protein L19polymer20324065.71UniProt (P36241)
Pfam (PF01280)
In PDB
Drosophila melanogaster (Fruit fly)
51CA60S ribosomal protein L8polymer25627957.71UniProt (Q9V3G1)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Drosophila melanogaster (Fruit fly)
52CS60S ribosomal protein L18apolymer17721076.81UniProt (P41093)
Pfam (PF01775)
In PDB
Drosophila melanogaster (Fruit fly)
53CT60S ribosomal protein L21polymer15918519.91UniProt (Q9V9M7)
Pfam (PF01157)
In PDB
Drosophila melanogaster (Fruit fly)RH06526p, RE62581p
54CP60S ribosomal protein L17polymer18621642.21UniProt (Q9W3W8)
Pfam (PF00237)
In PDB
Drosophila melanogaster (Fruit fly)
55CU60S ribosomal protein L22polymer29930675.71UniProt (P50887)
Pfam (PF01776)
In PDB
Drosophila melanogaster (Fruit fly)
56CX60S ribosomal protein L23Apolymer27729539.41UniProt (Q9W0A8)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Drosophila melanogaster (Fruit fly)FI01658p
57CY60S ribosomal protein L26polymer14917322.31UniProt (Q9VVU2)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Drosophila melanogaster (Fruit fly)RE17611p
58CW60S ribosomal protein L24polymer15517568.11UniProt (Q9VJY6)
Pfam (PF01246)
In PDB
Drosophila melanogaster (Fruit fly)
59CZ60S ribosomal protein L27polymer13515945.11UniProt (Q9VBN5)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Drosophila melanogaster (Fruit fly)
60Cr60S ribosomal protein L28polymer14416067.01UniProt (Q9VZS5)
Pfam (PF01778)
In PDB
Drosophila melanogaster (Fruit fly)
61Ch60S ribosomal protein L35polymer12314491.71UniProt (Q9W499)
Pfam (PF00831)
In PDB
Drosophila melanogaster (Fruit fly)FI02809p
62Cb60S ribosomal protein L29polymer768945.41UniProt (Q24154)
Pfam (PF01779)
In PDB
Drosophila melanogaster (Fruit fly)L43
63CB60S ribosomal protein L3polymer41647020.11UniProt (O16797)
Pfam (PF00297)
In PDB
Drosophila melanogaster (Fruit fly)
64CF60S ribosomal protein L7polymer25229615.21UniProt (P32100)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Drosophila melanogaster (Fruit fly)
65Cc60S ribosomal protein L30polymer11112253.41UniProt (Q9VJ19)
Pfam (PF01248)
In PDB
Drosophila melanogaster (Fruit fly)RE25263p
66Cd60S ribosomal protein L31polymer12414563.71UniProt (Q9V597)
Pfam (PF01198)
In PDB
Drosophila melanogaster (Fruit fly)
67Ce60S ribosomal protein L32polymer13416060.91UniProt (P04359)
Pfam (PF01655)
In PDB
Drosophila melanogaster (Fruit fly)Ribosomal protein 49
68Cf60S ribosomal protein L35Apolymer15717701.81UniProt (Q9VNB9)
Pfam (PF01247)
In PDB
Drosophila melanogaster (Fruit fly)RH44960p, RE17737p
69Cg60S ribosomal protein L34apolymer16218117.91UniProt (Q9VBH8)
Pfam (PF01199)
In PDB
Drosophila melanogaster (Fruit fly)FI02850p
70Ci60S ribosomal protein L36polymer11513541.21UniProt (P49630)
Pfam (PF01158)
In PDB
Drosophila melanogaster (Fruit fly)Protein minute(1)1B
71Cj60S ribosomal protein L37-Apolymer9310673.51UniProt (Q9VXX8)
Pfam (PF01907)
In PDB
Drosophila melanogaster (Fruit fly)
72Ck60S ribosomal protein L38polymer708219.81UniProt (Q9W5N2)
Pfam (PF01781)
In PDB
Drosophila melanogaster (Fruit fly)
73Cl60S ribosomal protein L39polymer516318.61UniProt (O16130)
Pfam (PF00832)
In PDB
Drosophila melanogaster (Fruit fly)Ribosomal protein 46
74CC60S ribosomal protein L4polymer40145121.01UniProt (P09180)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Drosophila melanogaster (Fruit fly)L1
75Cm60S ribosomal protein L40polymer526200.61UniProt (P18101)
Pfam (PF01020)
In PDB
Drosophila melanogaster (Fruit fly)
76Cn60S ribosomal protein L41polymer253416.41UniProt (Q962S2)
Pfam (PF05162)
In PDB
Drosophila melanogaster (Fruit fly)RE63504p
77Cp60S ribosomal protein L37apolymer9210335.31UniProt (Q9VMU4)
Pfam (PF01780)
In PDB
Drosophila melanogaster (Fruit fly)
78Co60S ribosomal protein L36Apolymer10412540.21UniProt (Q9VLT7)
Pfam (PF00935)
In PDB
Drosophila melanogaster (Fruit fly)IP17351p
79CJ60S ribosomal protein L11polymer18421153.51UniProt (P46222)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Drosophila melanogaster (Fruit fly)
80CH60S ribosomal protein L9polymer19021426.01UniProt (P50882)
Pfam (PF00347)
In PDB
Drosophila melanogaster (Fruit fly)
81CE60S ribosomal protein L6, isoform Apolymer24327766.11UniProt (Q9V9W2)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Drosophila melanogaster (Fruit fly)
82CG60S ribosomal protein L7apolymer27130803.01UniProt (P46223)
Pfam (PF01248)
In PDB
Drosophila melanogaster (Fruit fly)
83A528S ribosomal RNApolymer39701277668.51GenBank (M21017)Drosophila melanogaster (fruit fly)
84A92S ribosomal RNApolymer309665.71GenBank (M21017)Drosophila melanogaster (fruit fly)
85A75S ribosomal RNApolymer12038627.91GenBank (M25016)Drosophila melanogaster (fruit fly)
86A85.8S ribosomal RNApolymer12339616.61GenBank (M21017)Drosophila melanogaster (fruit fly)
Sequence modifications
AV: 1 - 83 (UniProt: O76927)
PDBExternal DatabaseDetails
Gln 2Glu 2conflict
Phe 8Asn 8conflict
Gly 25His 25conflict
Ile 32Val 32conflict
Met 34Leu 34conflict
Asn 35Ser 35conflict
Val 36Ile 36conflict
Ala 58Glu 58conflict
Ser 68Cys 68conflict
Leu 70Val 70conflict
Ala 75Lys 75conflict
Val 79Ile 79conflict
Ser 80Thr 80conflict
Ah: 108 - 228 (UniProt: Q9VBX3)
PDBExternal DatabaseDetails
Lys 212Glu 243conflict
Glu 213Asp 244conflict
Pro 215Ser 246conflict
Glu 217Gln 248conflict
Ile 226Leu 257conflict
Gln 227Arg 258conflict
Asn 228Asp 259conflict
Cz: 1 - 217 (UniProt: Q9VTP4)
PDBExternal DatabaseDetails
Ser 72-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3670250.0
All*Total formula weight3670250.0
*Water molecules are not included.

223790

PDB entries from 2024-08-14

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