4V6M
Structure of the ribosome-SecYE complex in the membrane environment
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S RIBOSOMAL RNA | polymer | 1542 | 499690.0 | 1 | GenBank (J01695) | Escherichia coli | |
| 2 | B (AX) | mRNA | polymer | 11 | 3442.1 | 1 | Escherichia coli | ||
| 3 | C (AV) | FtsQ nascent chain | polymer | 77 | 24876.8 | 1 | GenBank (AP012030) | Escherichia coli DH1 (FtsQ nascent chain) | |
| 4 | D (AZ) | Cell division protein FtsQ | polymer | 98 | 11085.8 | 1 | UniProt (Q8X9Y5) Pfam (PF08478) | Escherichia coli O157:H7 | Cell division protein; ingrowth of wall at septum |
| 5 | E, F (A0, A1) | Apolipoprotein A-I | polymer | 200 | 23309.4 | 2 | UniProt (P02647) Pfam (PF01442) | Homo sapiens | Apo-AI, ApoA-I, Apolipoprotein A1, Apolipoprotein A-I(1-242) |
| 6 | G (AB) | 30S ribosomal protein S2 | polymer | 240 | 26650.5 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli K-12 | |
| 7 | H (AC) | 30S ribosomal protein S3 | polymer | 232 | 25900.1 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli K-12 | |
| 8 | I (AD) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli K-12 | |
| 9 | J (AE) | 30S ribosomal protein S5 | polymer | 166 | 17498.2 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli K-12 | |
| 10 | K (AF) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli K-12 | 30S ribosomal protein S6, fully modified isoform, 30S ribosomal protein S6, non-modified isoform |
| 11 | L (AG) | 30S ribosomal protein S7 | polymer | 178 | 19924.0 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli K-12 | |
| 12 | M (AH) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli K-12 | |
| 13 | N (AI) | 30S ribosomal protein S9 | polymer | 129 | 14755.1 | 1 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli K-12 | |
| 14 | O (AJ) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli K-12 | |
| 15 | P (AK) | 30S ribosomal protein S11 | polymer | 128 | 13739.8 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli K-12 | |
| 16 | Q (AL) | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli K-12 | |
| 17 | R (AM) | 30S ribosomal protein S13 | polymer | 117 | 12997.3 | 1 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli K-12 | |
| 18 | S (AN) | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 1 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli K-12 | |
| 19 | T (AO) | 30S ribosomal protein S15 | polymer | 88 | 10188.7 | 1 | UniProt (P0A7S3) | Escherichia coli K-12 | |
| 20 | U (AP) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli K-12 | |
| 21 | V (AQ) | 30S ribosomal protein S17 | polymer | 83 | 9593.3 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli K-12 | |
| 22 | W (AR) | 30S ribosomal protein S18 | polymer | 74 | 8874.3 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli K-12 | |
| 23 | X (AS) | 30S ribosomal protein S19 | polymer | 91 | 10324.2 | 1 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli K-12 | |
| 24 | Y (AT) | 30S ribosomal protein S20 | polymer | 86 | 9577.3 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli K-12 | |
| 25 | Z (AU) | 30S ribosomal protein S21 | polymer | 70 | 8392.8 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli K-12 | |
| 26 | AA (B7) | 5S RIBOSOMAL RNA | polymer | 120 | 38790.1 | 1 | GenBank (AP012030) | Escherichia coli DH1 | |
| 27 | BA (B8) | 23S RIBOSOMAL RNA | polymer | 2904 | 941612.4 | 1 | GenBank (AP012030) | Escherichia coli DH1 | |
| 28 | CA (BA) | Preprotein translocase secY subunit | polymer | 435 | 47669.3 | 1 | UniProt (Q0TCG1) | Escherichia coli 536 | |
| 29 | DA (BB) | Preprotein translocase secE subunit | polymer | 116 | 12623.3 | 1 | UniProt (Q0TA84) | Escherichia coli 536 | Inner membrane preprotein translocase |
| 30 | EA (B5) | 50S ribosomal protein L1 | polymer | 234 | 24765.7 | 1 | UniProt (P0A7L0) Pfam (PF00687) | Escherichia coli K-12 | |
| 31 | FA (B6) | 50S ribosomal protein L2 | polymer | 272 | 29792.4 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli K-12 | |
| 32 | GA (BD) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli K-12 | |
| 33 | HA (BE) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli K-12 | |
| 34 | IA (BF) | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli K-12 | |
| 35 | JA (BG) | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli K-12 | |
| 36 | KA (BH) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli K-12 | |
| 37 | LA (BI) | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli K-12 | |
| 38 | MA (BJ) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli K-12 | |
| 39 | NA (BK) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli K-12 | |
| 40 | OA (BL) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli K-12 | |
| 41 | PA (BM) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli K-12 | |
| 42 | QA (BN) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli K-12 | |
| 43 | RA (BO) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli K-12 | |
| 44 | SA (BP) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli K-12 | |
| 45 | TA (BQ) | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli K-12 | |
| 46 | UA (BR) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli K-12 | |
| 47 | VA (BS) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli K-12 | |
| 48 | WA (BT) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli K-12 | |
| 49 | XA (BU) | 50S ribosomal protein L24 | polymer | 103 | 11208.1 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli K-12 | |
| 50 | YA (BV) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli K-12 | |
| 51 | ZA (BW) | 50S ribosomal protein L27 | polymer | 84 | 9015.3 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli K-12 | |
| 52 | AB (BX) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli K-12 | |
| 53 | BB (BY) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli K-12 | |
| 54 | CB (BZ) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli K-12 | |
| 55 | DB (B0) | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli K-12 | |
| 56 | EB (B1) | 50S ribosomal protein L33 | polymer | 54 | 6257.4 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli K-12 | |
| 57 | FB (B2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli K-12 | |
| 58 | GB (B3) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli K-12 | Ribosomal protein A |
| 59 | HB (B4) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli K-12 | Ribosomal protein B |
| 60 | AC, AD, AE, BC, BD... (A0, A1, B8, BA, BB...) | (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE | non-polymer | 720.0 | 101 | Chemie (PEV) | |||
| 61 | AF, AG, CE, FC, FD... (BA, BB, B8, A0, A1...) | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | non-polymer | 749.0 | 32 | Chemie (PGV) |
Sequence modifications
AZ: 22 - 103 (UniProt: Q8X9Y5)
AO: 1 - 88 (UniProt: P0A7S3)
| PDB | External Database | Details |
|---|---|---|
| Gln 104 | - | expression tag |
| His 105 | - | expression tag |
| Ala 106 | - | expression tag |
| Arg 107 | - | expression tag |
| Leu 108 | - | expression tag |
| Asp 109 | - | expression tag |
| Lys 110 | - | expression tag |
| Pro 111 | - | expression tag |
| Gly 112 | - | expression tag |
| Ala 113 | - | expression tag |
| Arg 114 | - | expression tag |
| His 115 | - | expression tag |
| Pro 116 | - | expression tag |
| Cys 117 | - | expression tag |
| Trp 118 | - | expression tag |
| Pro 119 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Arg 79 | Gln 80 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2314239.9 | |
| Non-Polymers* | Number of molecules | 133 |
| Total formula weight | 96689.4 | |
| All* | Total formula weight | 2410929.3 |
