Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V6F

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA23S RIBOSOMAL RNApolymer2909946094.41GenBank (AP008226.1)Thermus thermophilus
2AB, DB5S RIBOSOMAL RNApolymer12239540.62GenBank (X01554.1)Thermus thermophilus
3AD, DD50S RIBOSOMAL PROTEIN L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
4AE, DE50S RIBOSOMAL PROTEIN L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
5AF, DF50S RIBOSOMAL PROTEIN L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
6AG, DG50S RIBOSOMAL PROTEIN L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
7AH, DH50S RIBOSOMAL PROTEIN L6polymer18019568.92UniProt (Q5SHQ3)
Pfam (PF00347)
UniProt (by SIFTS) (A0A0M9ADP1)
In PDB		Thermus thermophilus
8AK, DK50S RIBOSOMAL PROTEIN L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
9AM, DM50S RIBOSOMAL PROTEIN L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
10AN, DN50S RIBOSOMAL PROTEIN L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
11AO, DO50S RIBOSOMAL PROTEIN L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
12AP, DP50S RIBOSOMAL PROTEIN L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
13A0, D050S RIBOSOMAL PROTEIN L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
14AQ, DQ50S RIBOSOMAL PROTEIN L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
15AR, DR50S RIBOSOMAL PROTEIN L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
16A1, D150S RIBOSOMAL PROTEIN L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
17A2, D250S RIBOSOMAL PROTEIN L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
18AS, DS50S RIBOSOMAL PROTEIN L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
19AT, DT50S RIBOSOMAL PROTEIN L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
20AU, DU50S RIBOSOMAL PROTEIN L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
21AV, DV50S RIBOSOMAL PROTEIN L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
22A3, D350S RIBOSOMAL PROTEIN L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
23AZ, DZ50S RIBOSOMAL PROTEIN L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
24AW, DW50S RIBOSOMAL PROTEIN L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
25AX, DX50S RIBOSOMAL PROTEIN L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
26A4, D450S RIBOSOMAL PROTEIN L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
27A5, D550S RIBOSOMAL PROTEIN L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
28A6, D650S RIBOSOMAL PROTEIN L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
29A7, D750S RIBOSOMAL PROTEIN L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
30A8, D850S RIBOSOMAL PROTEIN L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
31BA16S ribosomal RNApolymer1516492083.31GenBank (M26923.1)Thermus thermophilus
32BE, CE30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
33BF, CF30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
34BG, CG30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
35BH, CH30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
36BI, CI30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilusTS9
37BJ, CJ30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
38BK, CK30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
39BL, CL30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
40BM, CM30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
41BN, CN30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
42BO, CO30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
43BP, CP30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
44BQ, CQ30S ribosomal protein S14 type Zpolymer617158.72UniProt (P24320)
UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
45BR, CR30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
46BS, CS30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
47BT, CT30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
48BU, CU30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
49BV, CV30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
50BW, CW30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
51BX, CX30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilusS31
52BD, BB, BC, CD, CB...TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37polymer7624599.76Escherichia coli
53B1, C1MRNApolymer309442.42
54CA16S ribosomal RNApolymer1515491777.11GenBank (M26923.1)Thermus thermophilus
55DA23S RRNApolymer2912947013.01GenBank (AP008226.1)Thermus thermophilus
56DI, DJ50S ribosomal protein L7/L12polymer12513086.22UniProt (Q8VVE2)
Pfam (PF16320)
Pfam (PF00542)
In PDB		Thermus thermophilus
57DY50S ribosomal protein L10polymer17318586.61UniProt (Q8VVE3)
Pfam (PF00466)
In PDB		Thermus thermophilus
58DL50S ribosomal protein L11polymer14715526.11UniProt (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
59AA, AT, BA, CA, DA...MAGNESIUM IONnon-polymer24.35345Chemie (MG)
60CG, D4, CQ, A4, BQ...ZINC IONnon-polymer65.46Chemie (ZN)
61waterwater18.06Chemie (HOH)
Sequence modifications
AA: 1 - 2902 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
-U 9395deletion
-U 9396deletion
A 654G 9919conflict
C 654G 9923conflict
G 654C 9934conflict
A 654C 9938conflict
U 1058G 10343conflict
A 1080C 10365conflict
AB, DB: 0 - 119 (GenBank: X01554.1)
PDBExternal DatabaseDetails
A 1-insertion
BQ, CQ: 1 - 61 (UniProt: P24320)
DA: 1 - 2902 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
U 161-insertion
A 654G 9919conflict
C 654G 9923conflict
G 654C 9934conflict
A 654C 9938conflict
U 1058G 10343conflict
A 1080C 10365conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains114
Total formula weight4548666.2
Non-Polymers*Number of molecules5351
Total formula weight130302.7
All*Total formula weight4678968.8
*Water molecules are not included.

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon