4V6F
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (AA) | 23S RIBOSOMAL RNA | polymer | 2909 | 946094.4 | 1 | GenBank (AP008226.1) | Thermus thermophilus | |
2 | B, DC (AB, DB) | 5S RIBOSOMAL RNA | polymer | 122 | 39540.6 | 2 | GenBank (X01554.1) | Thermus thermophilus | |
3 | C, EC (AD, DD) | 50S RIBOSOMAL PROTEIN L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
4 | D, FC (AE, DE) | 50S RIBOSOMAL PROTEIN L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus | |
5 | E, GC (AF, DF) | 50S RIBOSOMAL PROTEIN L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus | |
6 | F, HC (AG, DG) | 50S RIBOSOMAL PROTEIN L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus | |
7 | G, IC (AH, DH) | 50S RIBOSOMAL PROTEIN L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q5SHQ3) Pfam (PF00347) UniProt (by SIFTS) (A0A0M9ADP1) | Thermus thermophilus | |
8 | H, KC (AK, DK) | 50S RIBOSOMAL PROTEIN L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus | |
9 | I, OC (AM, DM) | 50S RIBOSOMAL PROTEIN L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus | |
10 | J, PC (AN, DN) | 50S RIBOSOMAL PROTEIN L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus | |
11 | K, QC (AO, DO) | 50S RIBOSOMAL PROTEIN L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus | |
12 | L, RC (AP, DP) | 50S RIBOSOMAL PROTEIN L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus | |
13 | M, SC (A0, D0) | 50S RIBOSOMAL PROTEIN L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
14 | N, TC (AQ, DQ) | 50S RIBOSOMAL PROTEIN L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus | |
15 | O, UC (AR, DR) | 50S RIBOSOMAL PROTEIN L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus | |
16 | P, VC (A1, D1) | 50S RIBOSOMAL PROTEIN L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus | |
17 | Q, WC (A2, D2) | 50S RIBOSOMAL PROTEIN L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus | |
18 | R, XC (AS, DS) | 50S RIBOSOMAL PROTEIN L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus | |
19 | S, YC (AT, DT) | 50S RIBOSOMAL PROTEIN L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus | |
20 | T, ZC (AU, DU) | 50S RIBOSOMAL PROTEIN L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus | |
21 | AD, U (AV, DV) | 50S RIBOSOMAL PROTEIN L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus | |
22 | BD, V (A3, D3) | 50S RIBOSOMAL PROTEIN L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus | |
23 | CD, W (AZ, DZ) | 50S RIBOSOMAL PROTEIN L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus | |
24 | DD, X (AW, DW) | 50S RIBOSOMAL PROTEIN L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus | |
25 | ED, Y (AX, DX) | 50S RIBOSOMAL PROTEIN L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus | |
26 | FD, Z (A4, D4) | 50S RIBOSOMAL PROTEIN L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus | |
27 | AA, GD (A5, D5) | 50S RIBOSOMAL PROTEIN L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus | |
28 | BA, HD (A6, D6) | 50S RIBOSOMAL PROTEIN L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus | |
29 | CA, ID (A7, D7) | 50S RIBOSOMAL PROTEIN L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
30 | DA, JD (A8, D8) | 50S RIBOSOMAL PROTEIN L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus | |
31 | EA (BA) | 16S ribosomal RNA | polymer | 1516 | 492083.3 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
32 | EB, FA (BE, CE) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
33 | FB, GA (BF, CF) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
34 | GB, HA (BG, CG) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
35 | HB, IA (BH, CH) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
36 | IB, JA (BI, CI) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | TS9 |
37 | JB, KA (BJ, CJ) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
38 | KB, LA (BK, CK) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
39 | LB, MA (BL, CL) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
40 | MB, NA (BM, CM) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
41 | NB, OA (BN, CN) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
42 | OB, PA (BO, CO) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
43 | PB, QA (BP, CP) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
44 | QB, RA (BQ, CQ) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P24320) UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
45 | RB, SA (BR, CR) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
46 | SB, TA (BS, CS) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
47 | TB, UA (BT, CT) | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
48 | UB, VA (BU, CU) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
49 | VB, WA (BV, CV) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
50 | WB, XA (BW, CW) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
51 | XB, YA (BX, CX) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | S31 |
52 | AB, AC, BB, YB, ZA... (BD, BB, BC, CD, CB...) | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | polymer | 76 | 24599.7 | 6 | Escherichia coli | ||
53 | BC, CB (B1, C1) | MRNA | polymer | 30 | 9442.4 | 2 | |||
54 | DB (CA) | 16S ribosomal RNA | polymer | 1515 | 491777.1 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
55 | CC (DA) | 23S RRNA | polymer | 2912 | 947013.0 | 1 | GenBank (AP008226.1) | Thermus thermophilus | |
56 | JC, NC (DI, DJ) | 50S ribosomal protein L7/L12 | polymer | 125 | 13086.2 | 2 | UniProt (Q8VVE2) Pfam (PF16320) Pfam (PF00542) | Thermus thermophilus | |
57 | LC (DY) | 50S ribosomal protein L10 | polymer | 173 | 18586.6 | 1 | UniProt (Q8VVE3) Pfam (PF00466) | Thermus thermophilus | |
58 | MC (DL) | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 1 | UniProt (Q5SLP6) Pfam (PF03946) Pfam (PF00298) | Thermus thermophilus | |
59 | AAA, AAB, AAC, AAD, AAE... (AA, AT, BA, CA, DA...) | MAGNESIUM ION | non-polymer | 24.3 | 5345 | Chemie (MG) | |||
60 | BID, FAH, PJD, SAB, SCC... (CG, D4, CQ, A4, BQ...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
61 | FBH, GBH (BA, B1) | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence modifications
AA: 1 - 2902 (GenBank: AP008226.1)
AB, DB: 0 - 119 (GenBank: X01554.1)
BQ, CQ: 1 - 61 (UniProt: P24320)
DA: 1 - 2902 (GenBank: AP008226.1)
PDB | External Database | Details |
---|---|---|
- | U 9395 | deletion |
- | U 9396 | deletion |
A 654 | G 9919 | conflict |
C 654 | G 9923 | conflict |
G 654 | C 9934 | conflict |
A 654 | C 9938 | conflict |
U 1058 | G 10343 | conflict |
A 1080 | C 10365 | conflict |
PDB | External Database | Details |
---|---|---|
A 1 | - | insertion |
DA: 1 - 2902 (GenBank: AP008226.1)
PDB | External Database | Details |
---|---|---|
U 161 | - | insertion |
A 654 | G 9919 | conflict |
C 654 | G 9923 | conflict |
G 654 | C 9934 | conflict |
A 654 | C 9938 | conflict |
U 1058 | G 10343 | conflict |
A 1080 | C 10365 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 114 |
Total formula weight | 4548666.2 | |
Non-Polymers* | Number of molecules | 5351 |
Total formula weight | 130302.7 | |
All* | Total formula weight | 4678968.8 |