4V66
Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (AA, AP, AE) | A/T, P and E-site tRNAs | polymer | 76 | 24518.6 | 3 | PDB (4V7W) | Escherichia coli | |
| 2 | D (AM) | mRNA model | polymer | 20 | 6078.4 | 1 | PDB (4V7W) | Escherichia coli | |
| 3 | E (A1) | 16S rRNA | polymer | 1530 | 495927.7 | 1 | PDB (4V7W) | Escherichia coli | |
| 4 | F (AB) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli | |
| 5 | G (AC) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli | |
| 6 | H (AD) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli | |
| 7 | I (AF) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli | |
| 8 | J (AG) | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli | |
| 9 | K (AH) | 30S ribosomal protein S15 | polymer | 89 | 10319.9 | 1 | UniProt (Q8X9M2) Pfam (PF00312) | Escherichia coli | |
| 10 | L (AI) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli | |
| 11 | M (AJ) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli | |
| 12 | N (AK) | 30S ribosomal protein S18 | polymer | 75 | 9006.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli | |
| 13 | O (AL) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli | |
| 14 | P (AN) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli | |
| 15 | Q (AO) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | |
| 16 | R (AQ) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli | |
| 17 | S (AR) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 18 | T (AS) | 30S ribosomal protein S5 | polymer | 159 | 16772.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | |
| 19 | U (AT) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | |
| 20 | V (AU) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | |
| 21 | W (AV) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (Q3YWV3) Pfam (PF00410) | Escherichia coli | |
| 22 | X (AW) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli | |
| 23 | Y (AX) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli | |
| 24 | Z (BA) | 5S rRNA | polymer | 117 | 37848.6 | 1 | GenBank (170517292) | Escherichia coli | |
| 25 | AA (BB) | 23S rRNA | polymer | 2903 | 941306.2 | 1 | GenBank (169887498) | Escherichia coli | |
| 26 | BA (BC) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | |
| 27 | CA (BD) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli | |
| 28 | DA (BE) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | |
| 29 | EA (BF) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | |
| 30 | FA (BG) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | |
| 31 | GA (BH) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | |
| 32 | HA (BI) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli | |
| 33 | IA (BJ) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli | |
| 34 | JA (BK) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli | |
| 35 | KA (BL) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | |
| 36 | LA (BM) | 50S ribosomal protein L23 | polymer | 99 | 11093.0 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli | |
| 37 | MA (BN) | 50S ribosomal protein L2 | polymer | 270 | 29550.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | |
| 38 | NA (BO) | 50S ribosomal protein L24 | polymer | 103 | 11210.1 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | |
| 39 | OA (BP) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | |
| 40 | PA (BQ) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | |
| 41 | QA (BR) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | |
| 42 | RA (BS) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) | Escherichia coli | |
| 43 | SA (BT) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli | |
| 44 | TA (BU) | 50S ribosomal protein L33 | polymer | 54 | 6257.4 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | |
| 45 | UA (BV) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | |
| 46 | VA (BW) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | |
| 47 | WA (BX) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli | |
| 48 | XA (BY) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | |
| 49 | YA (BZ) | 50S ribosomal protein L1P | polymer | 213 | 23978.0 | 1 | UniProt (P35024) Pfam (PF00687) | Sulfolobus acidocaldarius | |
| 50 | ZA (B1) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli | |
| 51 | AB (B2) | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | |
| 52 | BB (B3) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | |
| 53 | CB (B4) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | |
| 54 | DB (B5) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli | |
| 55 | EB (B6) | 50S ribosomal protein L13 | polymer | 140 | 15822.4 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli |
Sequence modifications
BZ: 2 - 217 (UniProt: P35024)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | insertion |
| - | Met 44 | deletion |
| Ser 70 | Phe 73 | conflict |
| Lys 82 | Asn 85 | conflict |
| - | Met 120 | deletion |
| - | Met 177 | deletion |
| - | Met 212 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 2242446.2 | |
| All* | Total formula weight | 2242446.2 |
