4V65
Structure of the E. coli ribosome in the Pre-accommodation state
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA, AP, AE | A/T, P and E-site tRNAs | polymer | 76 | 24518.6 | 3 | Escherichia coli | ||
2 | AM | mRNA model | polymer | 20 | 6078.4 | 1 | Escherichia coli | ||
3 | A1 | 16S rRNA | polymer | 1530 | 495927.7 | 1 | Escherichia coli | ||
4 | AB | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (P0A7V0) Pfam (PF00318) In PDB | Escherichia coli | |
5 | AC | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | |
6 | AD | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli | |
7 | AF | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli | |
8 | AG | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (P0AG59) Pfam (PF00253) In PDB | Escherichia coli | |
9 | AH | 30S ribosomal protein S15 | polymer | 89 | 10319.9 | 1 | UniProt (Q8X9M2) Pfam (PF00312) In PDB | Escherichia coli | |
10 | AI | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli | |
11 | AJ | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli | |
12 | AK | 30S ribosomal protein S18 | polymer | 75 | 9006.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli | |
13 | AL | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (P0A7U3) Pfam (PF00203) In PDB | Escherichia coli | |
14 | AN | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli | |
15 | AO | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli | |
16 | AQ | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli | |
17 | AR | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | |
18 | AS | 30S ribosomal protein S5 | polymer | 159 | 16772.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli | |
19 | AT | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | |
20 | AU | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | |
21 | AV | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (Q3YWV3) Pfam (PF00410) In PDB | Escherichia coli | |
22 | AW | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli | |
23 | AX | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli | |
24 | BA | 5S rRNA | polymer | 117 | 37848.6 | 1 | GenBank (170517292) | Escherichia coli | |
25 | BB | 23S rRNA | polymer | 2903 | 941306.2 | 1 | GenBank (169887498) | Escherichia coli | |
26 | BC | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | Escherichia coli | |
27 | BD | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli | |
28 | BE | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli | |
29 | BF | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | |
30 | BG | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | Escherichia coli | |
31 | BH | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli | |
32 | BI | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli | |
33 | BJ | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli | |
34 | BK | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | Escherichia coli | |
35 | BL | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli | |
36 | BM | 50S ribosomal protein L23 | polymer | 99 | 11093.0 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli | |
37 | BN | 50S ribosomal protein L2 | polymer | 270 | 29550.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | |
38 | BO | 50S ribosomal protein L24 | polymer | 103 | 11210.1 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli | |
39 | BP | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | |
40 | BQ | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | Escherichia coli | |
41 | BR | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | |
42 | BS | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli | |
43 | BT | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli | |
44 | BU | 50S ribosomal protein L33 | polymer | 54 | 6257.4 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Shigella sonnei | |
45 | BV | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Shigella sonnei | |
46 | BW | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Shigella sonnei | |
47 | BX | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli | |
48 | BY | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | |
49 | BZ | 50S ribosomal protein L1P | polymer | 213 | 23978.0 | 1 | UniProt (P35024) Pfam (PF00687) In PDB | Sulfolobus acidocaldarius | |
50 | B1 | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | Escherichia coli | |
51 | B2 | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli | |
52 | B3 | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | Escherichia coli | |
53 | B4 | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | Escherichia coli | |
54 | B5 | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | Escherichia coli | |
55 | B6 | 50S ribosomal protein L13 | polymer | 140 | 15822.4 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | Escherichia coli |
Sequence modifications
BZ: 2 - 217 (UniProt: P35024)
PDB | External Database | Details |
---|---|---|
Met 1 | - | insertion |
- | Met 44 | deletion |
Ser 70 | Phe 73 | conflict |
Lys 82 | Asn 85 | conflict |
- | Met 120 | deletion |
- | Met 177 | deletion |
- | Met 212 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 57 |
Total formula weight | 2242446.2 | |
All* | Total formula weight | 2242446.2 |