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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V65

Structure of the E. coli ribosome in the Pre-accommodation state

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, AP, AEA/T, P and E-site tRNAspolymer7624518.63Escherichia coli
2AMmRNA modelpolymer206078.41Escherichia coli
3A116S rRNApolymer1530495927.71Escherichia coli
4AB30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli
5AC30S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli
6AD30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
7AF30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli
8AG30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli
9AH30S ribosomal protein S15polymer8910319.91UniProt (Q8X9M2)
Pfam (PF00312)
In PDB		Escherichia coli
10AI30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli
11AJ30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli
12AK30S ribosomal protein S18polymer759006.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli
13AL30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli
14AN30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
15AO30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
16AQ30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli
17AR30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
18AS30S ribosomal protein S5polymer15916772.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
19AT30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
20AU30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli
21AV30S ribosomal protein S8polymer13014146.61UniProt (Q3YWV3)
Pfam (PF00410)
In PDB		Escherichia coli
22AW30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli
23AX30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli
24BA5S rRNApolymer11737848.61GenBank (170517292)Escherichia coli
25BB23S rRNApolymer2903941306.21GenBank (169887498)Escherichia coli
26BC50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli
27BD50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli
28BE50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
29BF50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli
30BG50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli
31BH50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli
32BI50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli
33BJ50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli
34BK50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli
35BL50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli
36BM50S ribosomal protein L23polymer9911093.01UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli
37BN50S ribosomal protein L2polymer27029550.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli
38BO50S ribosomal protein L24polymer10311210.11UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
39BP50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli
40BQ50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli
41BR50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli
42BS50S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli
43BT50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli
44BU50S ribosomal protein L33polymer546257.41UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Shigella sonnei
45BV50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Shigella sonnei
46BW50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Shigella sonnei
47BX50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli
48BY50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli
49BZ50S ribosomal protein L1Ppolymer21323978.01UniProt (P35024)
Pfam (PF00687)
In PDB		Sulfolobus acidocaldarius
50B150S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli
51B250S ribosomal protein L5polymer17820202.41UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
52B350S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli
53B450S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli
54B550S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli
55B650S ribosomal protein L13polymer14015822.41UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli
Sequence modifications
BZ: 2 - 217 (UniProt: P35024)
PDBExternal DatabaseDetails
Met 1-insertion
-Met 44deletion
Ser 70Phe 73conflict
Lys 82Asn 85conflict
-Met 120deletion
-Met 177deletion
-Met 212deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2242446.2
All*Total formula weight2242446.2
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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