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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V5L

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S RRNApolymer1522493958.31GenBank (55979969)THERMUS THERMOPHILUS
2AB30S RIBOSOMAL PROTEIN S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		THERMUS THERMOPHILUS
3AC30S RIBOSOMAL PROTEIN S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		THERMUS THERMOPHILUS
4AD30S RIBOSOMAL PROTEIN S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		THERMUS THERMOPHILUS
5AE30S RIBOSOMAL PROTEIN S5polymer16217583.41UniProt (P27152)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB		THERMUS THERMOPHILUS
6AF30S RIBOSOMAL PROTEIN S6polymer10111988.81UniProt (P23370)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		THERMUS THERMOPHILUS
7AG30S RIBOSOMAL PROTEIN S7polymer15618051.01UniProt (P62667)
Pfam (PF00177)
UniProt (by SIFTS) (P17291)
In PDB		THERMUS THERMOPHILUS
8AH30S RIBOSOMAL PROTEIN S8polymer13815868.61UniProt (P24319)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		THERMUS THERMOPHILUS
9AI30S RIBOSOMAL PROTEIN S9polymer12814429.71UniProt (P62669)
Pfam (PF00380)
In PDB		THERMUS THERMOPHILUS
10AJ30S RIBOSOMAL PROTEIN S10polymer10511955.01UniProt (P80375)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB		THERMUS THERMOPHILUS
11AK30S RIBOSOMAL PROTEIN S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		THERMUS THERMOPHILUS
12AL30S RIBOSOMAL PROTEIN S12polymer13514920.81UniProt (P17293)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB		THERMUS THERMOPHILUS
13AM30S RIBOSOMAL PROTEIN S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		THERMUS THERMOPHILUS
14AN30S RIBOSOMAL PROTEIN S14polymer617158.71UniProt (P24320)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		THERMUS THERMOPHILUS
15AO30S RIBOSOMAL PROTEIN S15polymer8910578.41UniProt (P80378)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		THERMUS THERMOPHILUS
16AP30S RIBOSOMAL PROTEIN S16polymer8810410.01UniProt (P80379)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB		THERMUS THERMOPHILUS
17AQ30S RIBOSOMAL PROTEIN S17polymer10512325.71UniProt (Q5SHP7)
In PDB		THERMUS THERMOPHILUS
18AR30S RIBOSOMAL PROTEIN S18polymer8810258.31UniProt (P62659)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		THERMUS THERMOPHILUS
19AS30S RIBOSOMAL PROTEIN S19polymer9310605.51UniProt (P80381)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		THERMUS THERMOPHILUS
20AT30S RIBOSOMAL PROTEIN S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB		THERMUS THERMOPHILUS
21AU30S RIBOSOMAL PROTEIN THXpolymer273350.01UniProt (P62612)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		THERMUS THERMOPHILUS
22AV, AWE-SITE TRNA PHE OR P-SITE TRNA PHEpolymer7624485.52ESCHERICHIA COLI
23AXMRNApolymer144495.71ESCHERICHIA COLI
24AYA-SITE TRNA G24A TRP-TRNA TRPpolymer7724813.11ESCHERICHIA COLI
25AZELONGATION FACTOR TUpolymer40544709.91UniProt (P60339)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF03143)
In PDB		THERMUS THERMOPHILUSEF-TU-B
26B050S RIBOSOMAL PROTEIN L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		THERMUS THERMOPHILUS
27B150S RIBOSOMAL PROTEIN L28polymer9811004.21UniProt (P60494)
Pfam (PF00830)
In PDB		THERMUS THERMOPHILUS
28B250S RIBOSOMAL PROTEIN L29polymer728670.31UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		THERMUS THERMOPHILUS
29B350S RIBOSOMAL PROTEIN L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		THERMUS THERMOPHILUS
30B450S RIBOSOMAL PROTEIN L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		THERMUS THERMOPHILUS
31B550S RIBOSOMAL PROTEIN L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB		THERMUS THERMOPHILUS
32B650S RIBOSOMAL PROTEIN L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB		THERMUS THERMOPHILUS
33B750S RIBOSOMAL PROTEIN L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		THERMUS THERMOPHILUS
34B850S RIBOSOMAL PROTEIN L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		THERMUS THERMOPHILUS
35B950S RIBOSOMAL PROTEIN L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		THERMUS THERMOPHILUS
36BA23S RIBOSOMAL RNApolymer2915947975.51GenBank (55979969)THERMUS THERMOPHILUS
37BB5S RIBOSOMAL RNApolymer12239540.61GenBank (55979969)THERMUS THERMOPHILUS
38BC50S RIBOSOMAL PROTEIN L1polymer22924872.71UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		THERMUS THERMOPHILUS
39BD50S RIBOSOMAL PROTEIN L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		THERMUS THERMOPHILUS
40BE50S RIBOSOMAL PROTEIN L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		THERMUS THERMOPHILUS
41BF50S RIBOSOMAL PROTEIN L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		THERMUS THERMOPHILUS
42BG50S RIBOSOMAL PROTEIN L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		THERMUS THERMOPHILUS
43BH50S RIBOSOMAL PROTEIN L6polymer18019568.91UniProt (Q5SHQ3)
In PDB		THERMUS THERMOPHILUS
44BJ50S RIBOSOMAL PROTEIN L10polymer13011081.71THERMUS THERMOPHILUS
45BK50S RIBOSOMAL PROTEIN L11polymer14011932.71THERMUS THERMOPHILUS
46BN50S RIBOSOMAL PROTEIN L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		THERMUS THERMOPHILUS
47BO50S RIBOSOMAL PROTEIN L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		THERMUS THERMOPHILUS
48BP50S RIBOSOMAL PROTEIN L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		THERMUS THERMOPHILUS
49BQ50S RIBOSOMAL PROTEIN L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		THERMUS THERMOPHILUS
50BR50S RIBOSOMAL PROTEIN L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		THERMUS THERMOPHILUS
51BS50S RIBOSOMAL PROTEIN L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		THERMUS THERMOPHILUS
52BT50S RIBOSOMAL PROTEIN L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB		THERMUS THERMOPHILUS
53BU50S RIBOSOMAL PROTEIN L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB		THERMUS THERMOPHILUS
54BV50S RIBOSOMAL PROTEIN L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		THERMUS THERMOPHILUS
55BW50S RIBOSOMAL PROTEIN L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		THERMUS THERMOPHILUS
56BX50S RIBOSOMAL PROTEIN L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		THERMUS THERMOPHILUS
57BY50S RIBOSOMAL PROTEIN L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		THERMUS THERMOPHILUS
58BZ50S RIBOSOMAL PROTEIN L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		THERMUS THERMOPHILUS
59AAPAROMOMYCINnon-polymer615.61Chemie (PAR)
60AD, AN, B4, B9ZINC IONnon-polymer65.44Chemie (ZN)
61AZPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
62AZMAGNESIUM IONnon-polymer24.31Chemie (MG)
63waterwater18.01Chemie (HOH)
Sequence modifications
AL: 5 - 135 (UniProt: P17293)
PDBExternal DatabaseDetails
Met 1-expression tag
Val 2-expression tag
Ala 3-expression tag
Leu 4-expression tag
BC: 0 - 228 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
Arg 27Leu 28conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2323591.3
Non-Polymers*Number of molecules7
Total formula weight1422.8
All*Total formula weight2325014.0
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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