4V5B

Structure of PDF binding helix in complex with the ribosome.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, BB (A0, C0)	50S RIBOSOMAL PROTEIN L32	polymer	56	6332.2	2	UniProt (Q0TIY5) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4)	ESCHERICHIA COLI
2	B, CB (A1, C1)	50S RIBOSOMAL PROTEIN L33	polymer	54	6257.4	2	UniProt (P0A7N9) Pfam (PF00471)	ESCHERICHIA COLI
3	C, DB (A2, C2)	50S RIBOSOMAL PROTEIN L34	polymer	46	5397.5	2	UniProt (P0A7P6) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5)	ESCHERICHIA COLI
4	D, EB (A3, C3)	50S RIBOSOMAL PROTEIN L35	polymer	64	7181.8	2	UniProt (P0A7Q1) Pfam (PF01632)	ESCHERICHIA COLI
5	E, FB (A4, C4)	50S RIBOSOMAL PROTEIN L36	polymer	38	4377.4	2	UniProt (P0A7Q7) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6)	ESCHERICHIA COLI
6	F (A5)	C-TERM HELIX PDF	polymer	16	1927.3	1	UniProt (P0A6K3)	ESCHERICHIA COLI
7	G, GB (AA, CA)	5S RIBOSOMAL RNA	polymer	120	38790.1	2		ESCHERICHIA COLI
8	H, HB (AB, CB)	23S RIBOSOMAL RNA	polymer	2904	941612.4	2		ESCHERICHIA COLI
9	I, IB (AC, CC)	50S RIBOSOMAL PROTEIN L2	polymer	273	29923.6	2	UniProt (P60424) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422)	ESCHERICHIA COLI
10	J, JB (AD, CD)	50S RIBOSOMAL PROTEIN L3	polymer	209	22277.5	2	UniProt (P60439) Pfam (PF00297) UniProt (by SIFTS) (P60438)	ESCHERICHIA COLI
11	K, KB (AE, CE)	50S RIBOSOMAL PROTEIN L4	polymer	201	22121.6	2	UniProt (P60725) Pfam (PF00573) UniProt (by SIFTS) (P60723)	ESCHERICHIA COLI
12	L, LB (AF, CF)	50S RIBOSOMAL PROTEIN L5	polymer	178	20202.4	2	UniProt (P62401) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399)	ESCHERICHIA COLI
13	M, MB (AG, CG)	50S RIBOSOMAL PROTEIN L6	polymer	176	18801.6	2	UniProt (P0AG57) Pfam (PF00347) UniProt (by SIFTS) (P0AG55)	ESCHERICHIA COLI
14	N, NB (AH, CH)	50S RIBOSOMAL PROTEIN L9	polymer	149	15789.0	2	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948)	ESCHERICHIA COLI
15	O, OB (AI, CI)	50S RIBOSOMAL PROTEIN L11	polymer	141	14763.2	2	UniProt (P0A7J8) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0A7J7)	ESCHERICHIA COLI
16	P, PB (AJ, CJ)	50S RIBOSOMAL PROTEIN L13	polymer	142	16050.6	2	UniProt (Q1R6A9) Pfam (PF00572) UniProt (by SIFTS) (P0AA10)	ESCHERICHIA COLI
17	Q, QB (AK, CK)	50S RIBOSOMAL PROTEIN L14	polymer	123	13565.1	2	UniProt (Q1R617) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3)	ESCHERICHIA COLI
18	R, RB (AL, CL)	50S RIBOSOMAL PROTEIN L15	polymer	144	15008.5	2	UniProt (P02413) Pfam (PF00828)	ESCHERICHIA COLI
19	S, SB (AM, CM)	50S RIBOSOMAL PROTEIN L16	polymer	136	15312.3	2	UniProt (P0ADY7) Pfam (PF00252)	ESCHERICHIA COLI
20	T, TB (AN, CN)	50S RIBOSOMAL PROTEIN L17	polymer	127	14393.7	2	UniProt (Q0TCG7) Pfam (PF01196) UniProt (by SIFTS) (P0AG44)	ESCHERICHIA COLI
21	U, UB (AO, CO)	50S RIBOSOMAL PROTEIN L18	polymer	117	12794.7	2	UniProt (P0C018) Pfam (PF00861)	ESCHERICHIA COLI
22	V, VB (AP, CP)	50S RIBOSOMAL PROTEIN L19	polymer	114	13028.1	2	UniProt (P0A7K6) Pfam (PF01245)	ESCHERICHIA COLI
23	W, WB (AQ, CQ)	50S RIBOSOMAL PROTEIN L20	polymer	117	13396.8	2	UniProt (P0A7L3) Pfam (PF00453)	ESCHERICHIA COLI
24	X, XB (AR, CR)	50S RIBOSOMAL PROTEIN L21	polymer	103	11586.4	2	UniProt (Q0TCS4) Pfam (PF00829) UniProt (by SIFTS) (P0AG48)	ESCHERICHIA COLI
25	Y, YB (AS, CS)	50S RIBOSOMAL PROTEIN L22	polymer	110	12253.4	2	UniProt (P61176) Pfam (PF00237) UniProt (by SIFTS) (P61175)	ESCHERICHIA COLI
26	Z, ZB (AT, CT)	50S RIBOSOMAL PROTEIN L23	polymer	100	11222.2	2	UniProt (Q1R606) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0)	ESCHERICHIA COLI
27	AA, AC (AU, CU)	50S RIBOSOMAL PROTEIN L24	polymer	103	11208.1	2	UniProt (P60625) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624)	ESCHERICHIA COLI
28	BA, BC (AV, CV)	50S RIBOSOMAL PROTEIN L25	polymer	94	10713.5	2	UniProt (P68919) Pfam (PF01386)	ESCHERICHIA COLI
29	CA, CC (AW, CW)	50S RIBOSOMAL PROTEIN L27	polymer	84	9015.3	2	UniProt (P0A7L9) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8)	ESCHERICHIA COLI
30	DA, DC (AX, CX)	50S RIBOSOMAL PROTEIN L29	polymer	63	7286.5	2	UniProt (P0A7M7) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6)	ESCHERICHIA COLI
31	EA, EC (AY, CY)	50S RIBOSOMAL PROTEIN L30	polymer	58	6423.6	2	UniProt (Q0TCF9) Pfam (PF00327) UniProt (by SIFTS) (P0AG51)	ESCHERICHIA COLI
32	FA, FC (AZ, CZ)	50S RIBOSOMAL PROTEIN L31	polymer	70	7887.1	2	UniProt (P0A7N0) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9)	ESCHERICHIA COLI
33	GA, GC (BA, DA)	16S RIBOSOMAL RNA	polymer	1542	499690.0	2		ESCHERICHIA COLI
34	HA, HC (BB, DB)	30S RIBOSOMAL PROTEIN S2	polymer	240	26650.5	2	UniProt (P0A7V1) UniProt (P0A7V0) Pfam (PF00318)	ESCHERICHIA COLI
35	IA, IC (BC, DC)	30S RIBOSOMAL PROTEIN S3	polymer	232	25900.1	2	UniProt (P0A7V4) UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189)	ESCHERICHIA COLI
36	JA, JC (BD, DD)	30S RIBOSOMAL PROTEIN S4	polymer	205	23383.0	2	UniProt (Q0TCG5) UniProt (A1AGI7) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8)	ESCHERICHIA COLI
37	KA, KC (BE, DE)	30S RIBOSOMAL PROTEIN S5	polymer	166	17498.2	2	UniProt (P0A7W1) UniProt (P0A7W3) Pfam (PF00333) Pfam (PF03719)	ESCHERICHIA COLI
38	LA, LC (BF, DF)	30S RIBOSOMAL PROTEIN S6	polymer	135	15727.5	2	UniProt (P0A4D0) UniProt (P0A4D1) Pfam (PF01250) UniProt (by SIFTS) (P02358)	ESCHERICHIA COLI
39	MA, MC (BG, DG)	30S RIBOSOMAL PROTEIN S7	polymer	178	19924.0	2	UniProt (P66606) Pfam (PF00177) UniProt (by SIFTS) (P02359)	ESCHERICHIA COLI
40	NA, NC (BH, DH)	30S RIBOSOMAL PROTEIN S8	polymer	129	14015.4	2	UniProt (A1AGJ5) UniProt (P0A7W7) Pfam (PF00410)	ESCHERICHIA COLI
41	OA, OC (BI, DI)	30S RIBOSOMAL PROTEIN S9	polymer	129	14755.1	2	UniProt (P0A7X3) UniProt (P0A7X4) Pfam (PF00380)	ESCHERICHIA COLI
42	PA, PC (BJ, DJ)	30S RIBOSOMAL PROTEIN S10	polymer	103	11755.6	2	UniProt (P0A7R5) UniProt (P0A7R6) Pfam (PF00338)	ESCHERICHIA COLI
43	QA, QC (BK, DK)	30S RIBOSOMAL PROTEIN S11	polymer	128	13739.8	2	UniProt (A1AGI8) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9)	ESCHERICHIA COLI
44	RA, RC (BL, DL)	30S RIBOSOMAL PROTEIN S12	polymer	123	13637.0	2	UniProt (P0A7S3) UniProt (P0A7S4) Pfam (PF00164)	ESCHERICHIA COLI
45	SA, SC (BM, DM)	30S RIBOSOMAL PROTEIN S13	polymer	117	12997.3	2	UniProt (P0A7T1) UniProt (P0A7S9) Pfam (PF00416)	ESCHERICHIA COLI
46	TA, TC (BN, DN)	30S RIBOSOMAL PROTEIN S14	polymer	100	11475.4	2	UniProt (P0AG59) UniProt (P0AG61) Pfam (PF00253)	ESCHERICHIA COLI
47	UA, UC (BO, DO)	30S RIBOSOMAL PROTEIN S15	polymer	89	10319.9	2	UniProt (Q8X9M2) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4)	ESCHERICHIA COLI
48	VA, VC (BP, DP)	30S RIBOSOMAL PROTEIN S16	polymer	82	9207.6	2	UniProt (P0A7T3) UniProt (P0A7T4) Pfam (PF00886)	ESCHERICHIA COLI
49	WA, WC (BQ, DQ)	30S RIBOSOMAL PROTEIN S17	polymer	83	9593.3	2	UniProt (Q1R616) UniProt (P0AG65) Pfam (PF00366) UniProt (by SIFTS) (P0AG63)	ESCHERICHIA COLI
50	XA, XC (BR, DR)	30S RIBOSOMAL PROTEIN S18	polymer	74	8874.3	2	UniProt (P0A7T7) UniProt (P0A7T9) Pfam (PF01084)	ESCHERICHIA COLI
51	YA, YC (BS, DS)	30S RIBOSOMAL PROTEIN S19	polymer	91	10324.2	2	UniProt (Q0TCE5) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3)	ESCHERICHIA COLI
52	ZA, ZC (BT, DT)	30S RIBOSOMAL PROTEIN S20	polymer	86	9577.3	2	UniProt (Q0TLW7) UniProt (P0A7U9) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7)	ESCHERICHIA COLI
53	AB, AD (BU, DU)	30S RIBOSOMAL PROTEIN S21	polymer	71	8524.0	2	UniProt (P68680) UniProt (P68679) Pfam (PF01165)	ESCHERICHIA COLI
54	AE, AF, AG, AH, AI... (AB, BA, CB, DA, DN...)	MAGNESIUM ION	non-polymer		24.3	343	Chemie (MG)
55	AR, BR, CR, DR, ER... (CE, CJ, CK, CL, CN...)	water	water		18.0	1617	Chemie (HOH)

Sequence modifications

A5: 146 - 161 (UniProt: P0A6K3)

PDB	External Database	Details
Ala 146	Leu 147	engineered mutation

BC, DC: 1 - 232 (UniProt: P0A7V4)
BD, DD: 1 - 205 (UniProt: Q0TCG5)
BE, DE: 1 - 166 (UniProt: P0A7W1)
BF, DF: 1 - 131 (UniProt: P0A4D0)
BF, DF: 132 - 135 (PDB: 4V5B)
BG, DG: 1 - 155 (UniProt: P66606)
BG, DG: 156 - 178 (PDB: 4V5B)
BH, DH: 1 - 129 (UniProt: A1AGJ5)
BI, DI: 1 - 129 (UniProt: P0A7X3)
BJ, DJ: 1 - 103 (UniProt: P0A7R5)
BL, DL: 1 - 123 (UniProt: P0A7S3)
BM, DM: 1 - 117 (UniProt: P0A7T1)
BN, DN: 1 - 100 (UniProt: P0AG59)
BP, DP: 1 - 82 (UniProt: P0A7T3)
BQ, DQ: 1 - 83 (UniProt: Q1R616)
BR, DR: 1 - 74 (UniProt: P0A7T7)
BT, DT: 1 - 86 (UniProt: Q0TLW7)
BB, DB: 1 - 240 (UniProt: P0A7V1)
BU, DU: 0 - 70 (UniProt: P68680)

Contents of the asymmetric unit

Polymers	Number of chains	105
	Total formula weight	4287012.4
Non-Polymers*	Number of molecules	343
	Total formula weight	8336.6
All*	Total formula weight	4295349.1

*Water molecules are not included.