4V4Y
Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S ribosomal RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 2 | B (A1) | mRNA | polymer | 50 | 15565.7 | 1 | |||
| 3 | C, D, E (AC, AD, AB) | tRNA PHE (unmodified bases) | polymer | 76 | 24485.5 | 3 | Escherichia coli | ||
| 4 | F (AE) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 5 | G (AF) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 6 | H (AG) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 7 | I (AH) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus | |
| 8 | J (AI) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus | TS9 |
| 9 | K (AJ) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 10 | L (AK) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 11 | M (AL) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 12 | N (AM) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus | |
| 13 | O (AN) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 14 | P (AO) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 1 | UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus | |
| 15 | Q (AP) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 16 | R (AQ) | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 17 | S (AR) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus | |
| 18 | T (AS) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 19 | U (AT) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (P24321) Pfam (PF00366) | Thermus thermophilus | |
| 20 | V (AU) | 30S ribosomal protein S18 | polymer | 88 | 10244.3 | 1 | UniProt (P80382) Pfam (PF01084) | Thermus thermophilus | |
| 21 | W (AV) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus | |
| 22 | X (AW) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 23 | Y (AX) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (P62612) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus | |
| 24 | Z (BA) | 23S ribosomal RNA | polymer | 2916 | 948280.7 | 1 | GenBank (48268) | Thermus thermophilus | |
| 25 | AA (BB) | 5S ribosomal RNA | polymer | 123 | 39846.8 | 1 | GenBank (48271) | Thermus thermophilus | |
| 26 | BA (BC) | 50S ribosomal protein L1 | polymer | 229 | 24867.7 | 1 | UniProt (P27150) Pfam (PF00687) | Thermus thermophilus | |
| 27 | CA (BD) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
| 28 | DA (BE) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (P52860) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) | Thermus thermophilus | |
| 29 | EA (BF) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus | L1e |
| 30 | FA (BG) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 1 | UniProt (P41201) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) | Thermus thermophilus | TthL5, TL4 |
| 31 | GA (BH) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 1 | UniProt (P24316) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus | |
| 32 | HA (BK) | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 1 | UniProt (P27151) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus | |
| 33 | IA (BL) | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 1 | UniProt (P36238) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (Q5SLP6) | Thermus thermophilus | |
| 34 | JA (BM) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus | |
| 35 | KA (BN) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 1 | UniProt (P60558) Pfam (PF00238) | Thermus thermophilus | |
| 36 | LA (BO) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (P74910) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) | Thermus thermophilus | |
| 37 | MA (BP) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus | |
| 38 | NA (BQ) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
| 39 | OA (BR) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 1 | UniProt (P80320) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) | Thermus thermophilus | TL24 |
| 40 | PA (BS) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus | |
| 41 | QA (BT) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus | |
| 42 | RA (BU) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus | |
| 43 | SA (BV) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (P48286) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) | Thermus thermophilus | |
| 44 | TA (BW) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 1 | UniProt (Q9RA57) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) | Thermus thermophilus | L*23 |
| 45 | UA (BX) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q56435) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) | Thermus thermophilus | |
| 46 | VA (BY) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus | TL5 |
| 47 | WA (BZ) | Ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus | |
| 48 | XA (B1) | 50S ribosomal protein L29 | polymer | 67 | 8112.6 | 1 | UniProt (Q9LCY4) Pfam (PF00831) | Thermus thermophilus | |
| 49 | YA (B2) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) | Thermus thermophilus | |
| 50 | ZA (B3) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus | |
| 51 | AB (B4) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus | |
| 52 | BB (B5) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus | |
| 53 | CB (B6) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 54 | DB (B7) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (P80341) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) | Thermus thermophilus | |
| 55 | EB (B8) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (P80256) Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) | Thermus thermophilus | Ribosomal protein B |
Sequence modifications
BA: 1 - 2906 (GenBank: 48268)
BB: 0 - 119 (GenBank: 48271)
| PDB | External Database | Details |
|---|---|---|
| G 493 | - | INSERTION |
| PDB | External Database | Details |
|---|---|---|
| A -1 | - | INSERTION |
| U 120 | - | INSERTION |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 2287270.8 | |
| All* | Total formula weight | 2287270.8 |
