4UM9
Crystal structure of alpha V beta 6 with peptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | Integrin alpha-V heavy chain | polymer | 604 | 66413.5 | 2 | UniProt (P06756) Pfam (PF01839) Pfam (PF08441) In PDB | Homo sapiens (human) | |
2 | B | Integrin beta-6 | polymer | 483 | 52989.2 | 1 | UniProt (P18564) Pfam (PF17205) Pfam (PF00362) Pfam (PF18372) In PDB | Homo sapiens (human) | |
3 | D | Integrin beta-6 | polymer | 483 | 52962.2 | 1 | UniProt (P18564) Pfam (PF18372) Pfam (PF17205) Pfam (PF00362) In PDB | Homo sapiens (human) | |
4 | E, F | Latency-associated peptide | polymer | 13 | 1265.5 | 2 | UniProt (P10600) In PDB | Homo sapiens (human) | LAP |
5 | G, J, K, L, M... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
6 | H | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
7 | I, N | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 2 | In PDB GlyTouCan (G09724ZC) | |||
8 | O | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
9 | C, A, B | SULFATE ION | non-polymer | 96.1 | 6 | Chemie (SO4) | |||
10 | B, C, D, A | CALCIUM ION | non-polymer | 40.1 | 12 | Chemie (CA) | |||
11 | D, B | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
12 | B, C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 8 | Chemie (NAG) | |||
13 | C | alpha-D-mannopyranose | non-polymer | 180.2 | 1 | Chemie (MAN) | |||
14 | water | water | 18.0 | 230 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 595 (UniProt: P06756)
B: 1 - 474 (UniProt: P18564)
D: 1 - 474 (UniProt: P18564)
E, F: 239 - 249 (UniProt: P10600)
PDB | External Database | Details |
---|---|---|
Cys 400 | Met 430 | conflict |
Thr 596 | - | expression tag |
Gly 597 | - | expression tag |
Gly 598 | - | expression tag |
Leu 599 | - | expression tag |
Glu 600 | - | expression tag |
Val 601 | - | expression tag |
Leu 602 | - | expression tag |
Phe 603 | - | expression tag |
Gln 604 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Cys 270 | Ile 287 | conflict |
Asn 452 | His 469 | conflict |
Ser 475 | - | expression tag |
Arg 476 | - | expression tag |
Gly 477 | - | expression tag |
Leu 478 | - | expression tag |
Gln 479 | - | expression tag |
Thr 480 | - | expression tag |
Leu 481 | - | expression tag |
Phe 482 | - | expression tag |
Gln 483 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Thr 29 | Gln 46 | conflict |
Cys 270 | Ile 287 | conflict |
Asn 452 | His 469 | conflict |
Ser 475 | - | expression tag |
Arg 476 | - | expression tag |
Gly 477 | - | expression tag |
Leu 478 | - | expression tag |
Gln 479 | - | expression tag |
Thr 480 | - | expression tag |
Leu 481 | - | expression tag |
Phe 482 | - | expression tag |
Gln 483 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ace 238 | - | expression tag |
Nh2 250 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 241309.3 | |
Branched | Number of molecules | 10 |
Total formula weight | 6027.6 | |
Non-Polymers* | Number of molecules | 29 |
Total formula weight | 3055.7 | |
All* | Total formula weight | 250392.6 |