4U60
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with GM1 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Structural protein VP1 | polymer | 280 | 30994.9 | 5 | UniProt (E2ESL7) Pfam (PF00718) | Trichodysplasia spinulosa-associated polyomavirus | |
| 2 | F, G (F, G) | N-acetyl-alpha-neuraminic acid-(2-3)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)]beta-D-galactopyranose | branched | 674.6 | 2 | In PDB GlyTouCan (G45058HZ) | |||
| 3 | H, I (H, I) | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 2 | In PDB GlyTouCan (G48558GR) | |||
| 4 | J, K, M, N, Q... (A, B, C, D, E) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 5 | L, O, S, V, X (A, B, C, D, E) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 6 | P (B) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 1 | Chemie (SIA) | |||
| 7 | AA, BA, CA, Y, Z (C, D, E, A, B) | water | water | 18.0 | 1637 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 30 - 303 (UniProt: E2ESL7)
| PDB | External Database | Details |
|---|---|---|
| Gly 24 | - | expression tag |
| Ser 25 | - | expression tag |
| His 26 | - | expression tag |
| Met 27 | - | expression tag |
| Ala 28 | - | expression tag |
| Ser 29 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 154974.5 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 3347.0 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1448.5 | |
| All* | Total formula weight | 159770.0 |
