4TUA
Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | QA, XA | 16S rRNA | polymer | 1522 | 493958.3 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
2 | QB, XB | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus HB8 | |
3 | QC, XC | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus HB8 | |
4 | QD, XD | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus HB8 | |
5 | QE, XE | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus HB8 | |
6 | QF, XF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus HB8 | TS9 |
7 | QG, XG | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus HB8 | |
8 | QH, XH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P0DOY9) Pfam (PF00410) In PDB | Thermus thermophilus HB8 | |
9 | QI, XI | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus HB8 | |
10 | QJ, XJ | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus HB8 | |
11 | QK, XK | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus HB8 | |
12 | QL, XL | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus HB8 | |
13 | QM, XM | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus HB8 | |
14 | QN, XN | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P0DOY6) Pfam (PF00253) In PDB | Thermus thermophilus HB8 | |
15 | QO, XO | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus HB8 | |
16 | QP, XP | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus HB8 | |
17 | QQ, XQ | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (P0DOY7) Pfam (PF00366) In PDB | Thermus thermophilus HB8 | |
18 | QR, XR | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus HB8 | |
19 | QS, XS | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus HB8 | |
20 | QT, XT | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus HB8 | |
21 | QU, XU | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus HB8 | S31 |
22 | QV, XV | P-site tRNA-fMet | polymer | 77 | 24802.8 | 2 | GenBank (1848851804) | Escherichia coli str. K-12 substr. DH10B | |
23 | QX, XX | messenger RNA | polymer | 25 | 8179.0 | 2 | synthetic construct | ||
24 | QY, XY | A-site ASL-Thr | polymer | 17 | 5459.3 | 2 | synthetic construct | ||
25 | RA, YA | 23S rRNA | polymer | 2915 | 947895.4 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
26 | RB, YB | 5S rRNA | polymer | 122 | 39494.5 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
27 | RD, YD | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus HB8 | |
28 | RE, YE | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) In PDB | Thermus thermophilus HB8 | |
29 | RF, YF | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus HB8 | L1e |
30 | RG, YG | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus HB8 | |
31 | RH, YH | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (P0DOY8) Pfam (PF00347) In PDB | Thermus thermophilus HB8 | |
32 | RI, YI | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus HB8 | |
33 | RN, YN | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) In PDB | Thermus thermophilus HB8 | |
34 | RO, YO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus HB8 | |
35 | RP, YP | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) In PDB | Thermus thermophilus HB8 | |
36 | RQ, YQ | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus HB8 | |
37 | RR, YR | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) In PDB | Thermus thermophilus HB8 | |
38 | RS, YS | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) In PDB | Thermus thermophilus HB8 | TL24 |
39 | RT, YT | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus HB8 | |
40 | RU, YU | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) In PDB | Thermus thermophilus HB8 | |
41 | RV, YV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) In PDB | Thermus thermophilus HB8 | |
42 | RW, YW | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) In PDB | Thermus thermophilus HB8 | |
43 | RX, YX | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) In PDB | Thermus thermophilus HB8 | |
44 | RY, YY | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus HB8 | |
45 | RZ, YZ | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus HB8 | TL5 |
46 | R0, Y0 | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus HB8 | |
47 | R1, Y1 | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus HB8 | |
48 | R2, Y2 | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) In PDB | Thermus thermophilus HB8 | |
49 | R3, Y3 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) In PDB | Thermus thermophilus HB8 | |
50 | R4, Y4 | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) In PDB | Thermus thermophilus HB8 | |
51 | R5, Y5 | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus HB8 | |
52 | R6, Y6 | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) In PDB | Thermus thermophilus HB8 | |
53 | R7, Y7 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus HB8 | |
54 | R8, Y8 | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) In PDB | Thermus thermophilus HB8 | |
55 | R9, Y9 | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q5SHR2) Pfam (PF00444) In PDB | Thermus thermophilus HB8 | Ribosomal protein B |
56 | Z5, Z6 | CC-Puro | polymer | 3 | 1098.9 | 2 | synthetic construct | ||
57 | YA, QA, RA, XA, QE... | MAGNESIUM ION | non-polymer | 24.3 | 896 | Chemie (MG) | |||
58 | XA, QA | PAROMOMYCIN | non-polymer | 615.6 | 2 | Chemie (PAR) | |||
59 | QD, QN, XD, XN | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 112 |
Total formula weight | 4416495.8 | |
Non-Polymers* | Number of molecules | 902 |
Total formula weight | 23270.2 | |
All* | Total formula weight | 4439766.0 |